Table 1.
Comparison of amount detection and execution times (in seconds) of Mreps, Misa, Sputnik, GMATo, SciRoKo, TRF, and ProGeRF. The features were run on a Dell Inspiron, Intel core 2 duo 2.2 GHz processor with 2 MB cache, 3 GB RAM, 320 GB hard drive, Ubuntu operating system 14.04 LTS 32 bits.
| Sequence | Mreps | Misa | Sputnik | GMATo | SciRoKo | TRF | ProGeRF |
|---|---|---|---|---|---|---|---|
| Rep (time) | Rep (time) | Rep (time) | Rep (time) | Rep (time) | Rep (time) | Rep (time) | |
| NC_004318.1 (1204 kb) | 9608 (2.8) | 22867 (3.2) | 7420 (0.7) | 23539 (10.3) | 3763 (1.1) | 30244 (72.4) | 26164 (3.9) |
| NC_001136.8 (1531 kb) | 935 (1.4) | 10640 (3.3) | 1427 (0.9) | 10721 (7.7) | 185 (0.7) | 8101 (4.5) | 11552 (2.4) |
| NC_000962.2 (4411 kb) | 1412 (3.9) | 6832 (8.9) | 3140 (1.46) | 6846 (12.1) | 72 (1.5) | 19496 (24.5) | 11422 (4.0) |
| Setaria * (15 Mb) | — (—) | 2054241 (868.3) | 480644 (105.7) | 2073643 (9859.1) | 47770 (129.0) | 2438036 (1481.5) | 2319812 (1352.0) |
*Whole genome. The value in brackets is the runtimes in seconds.