Table 2.
Loci and nucleotide coverage between tools.
| Sequence | B | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Tools | Mreps | Misa | Sputnik | GMATo | SciRoKo | TRF | ProGeRF | ||
|
Plasmodium Chr4 NC_004318.1 |
A | Mreps | — | 78 (45) | 53 (33) | 78 (45) | 41 (36) | 98 (74) | 89 (60) |
| Misa | 47 (63) | — | 21 (4) | 100 (99) | 18 (40) | 88 (79) | 100 (98) | ||
| Sputnik | 91 (86) | 70 (74) | — | 70 (74) | 58 (69) | 0 (0) | 83 (84) | ||
| GMATo | 49 (62) | 100 (99) | 21 (40) | — | 19 (40) | 89 (79) | 100 (98) | ||
| SciRoKo | 96 (95) | 93 (76) | 95 (71) | 92 (76) | — | 95 (96) | 98 (91) | ||
| TRF | 51 (41) | 54 (32) | 0 (0) | 54 (32) | 16 (21) | — | 68 (46) | ||
| ProGeRF | 46 (56) | 86 (67) | 21 (31) | 86 (67) | 16 (32) | 87 (78) | — | ||
|
| |||||||||
| SAC Chr4 NC_001136.8 |
A | Mreps | — | 60 (40) | 42 (26) | 68 (40) | 18 (20) | 95 (74) | 86 (62) |
| Misa | 7 (12) | — | 3 (7) | 100 (99) | 1 (4) | 33 (37) | 100 (99) | ||
| Sputnik | 30 (35) | 29 (30) | — | 29 (30) | 12 (1) | 74 (73) | 38 (39) | ||
| GMATo | 7 (12) | 100 (99) | 3 (7) | — | 1 (4) | 33 (37) | 100 (99) | ||
| SciRoKo | 91 (89) | 77 (61) | 86 (59) | 77 (61) | — | 99 (99) | 94 (72) | ||
| TRF | 15 (16) | 41 (26) | 13 (12) | 41 (26) | 2 (5) | — | 48 (35) | ||
| ProGeRF | 8 (16) | 92 (80) | 4 (7) | 92 (80) | 1 (5) | 34 (39) | — | ||
|
| |||||||||
| MTB H37Rv NC_000962.2 |
A | Mreps | — | 9 (3) | 15 (7) | 9 (3) | 3 (3) | 91 (71) | 75 (58) |
| Misa | 2 (3) | — | 1 (1) | 100 (99) | 0.5 (1) | 13 (13) | 100 (99) | ||
| Sputnik | 6 (7) | 2 (2) | — | 2 (2) | 1 (1) | 66 (64) | 14 (14) | ||
| GMATo | 2 (3) | 100 (99) | 1 (1) | — | 0.5 (1) | 13 (13) | 100 (99) | ||
| SciRoKo | 73 (74) | 47 (36) | 63 (41) | 47 (36) | — | 100 (100) | 79 (72) | ||
| TRF | 8 (7) | 4 (1) | 10 (7) | 4 (1) | 0.4 (0.5) | — | 18 (13) | ||
| ProGeRF | 9 (16) | 60 (35) | 4 (4) | 60 (35) | 0.5 (1) | 29 (33) | — | ||
Percentage of the total number of detections (perfect and imperfect) of tools A also detected (i.e., covered) by tools B. The value in brackets is the proportion of nucleotides detected by A and covered by B.