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. 2015 Mar 8;16(1):161. doi: 10.1186/s12864-015-1387-6

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© Ahlstrom et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Maximum likelihood phylogenetic tree created from 3,039 concatenated variant sites using PhyML and the TPM1uf nucleotide substitution model, rooted to the “bison type” isolate (INMV 68). The tips are labeled as the VNTR type and the three most prevalent types are color-coded (INMV 2 = blue, INMV 3 = green, INMV 1 = red). Dotted lines indicate samples belonging to Herds A, B, and C, the eight divergent subtypes are labeled I-VIII, and bootstrap values of node support ≥ 70 are displayed.