Table 3. The numbers of hydrogen bonds and salt bridges between monomers in the dodecamers of APDkam589 and TET peptidases from P. horikoshii .
The calculations were performed using the PISA server (http://www.ebi.ac.uk/pdbe/pisa).
| APDkam589 | PhTET1 | PhTET1 | PhTET2 | PhTET3 | |
|---|---|---|---|---|---|
| PDB entry | 4wwv | 2wyr | 2cf4 | 1xfo | 2wzn |
| Sequence identity to APDkam589 (%) | 37 | 37 | 48 | 41 | |
| Between monomers in the dimer | |||||
| No. of hydrogen bonds | 21 | 32 | 28 | 20 | 24 |
| No. of salt bridges | 4 | 2 | 8 | 16 | 8 |
| Between monomers in the trimer | |||||
| No. of hydrogen bonds | 11 | 12 | 8 | 2 | 10 |
| No. of salt bridges | 1 | 9 | 5 | 4 | 2 |
| Total No. of salt bridges between different monomers in the dodecamer | |||||
| No. of hydrogen bonds | 258 | 336 | 264 | 144 | 264 |
| No. of salt bridges | 36 | 120 | 108 | 144 | 72 |