Table 2. Metal ion-binding sites of NQ-HaBLA classified based on ligand residues.
Chains generated by a crystal symmetry operator are indicated by an asterisk after the chain name. Square brackets indicate the chains involving the residues of the metal ion-binding sites. Parentheses indicate the locations of the metal ion-binding site. For example, (A, C) means that the metal ion-binding sites is located at the monomer surfaces of each chain A and chain C and (A/B) means that the metal ion-binding site is located at the interface between chain A and chain B.
| Bound metal ions | ||||||||
|---|---|---|---|---|---|---|---|---|
| Chelating atoms | Without soaking | Condition 1A | Condition 1B | Condition 1C | Condition 2A | Condition 2B | ||
| Metal ion-binding sites | Residue | Atom | 200mM Na+, 200mM Ca2+ | 100mM Cs+, 200mM Ca2+ | 25mM Cs+, 75mM Na+, 200mM Ca2+ | 10mM Cs+, 90mM Na+, 200mM Ca2+ | 100mM Na+, 200mM Sr2+ | 100 mM Na+, 100mM Sr2+, 100mM Ca2+ |
| Site 1 | Asp56 [A] | O1 | Ca2+ (A/C) | |||||
| Glu170 [C] | O1 | |||||||
| HOH 3 | O | |||||||
| Site 2 | Asp58 [C] | O1 | Ca2+ (C/A*) | Ca2+ (C/A*) | Ca2+ (C/A*) | Ca2+ (C/A*) | Sr2+ (C/A*) | |
| Asp128 [A*] | O1 | |||||||
| HOH 35 | O | |||||||
| Site 3 | Asp85 [A] | O1 | Ca2+ (A/B) | Ca2+ (A/B) | Ca2+ (A/B) | Ca2+ (A/B) | ||
| Asp87 [A] | O1 | |||||||
| Asp187 [B] | O1 | |||||||
| HOH 12 | O | |||||||
| Site 4 | Asp124 [A] | O1 | Ca2+ (A) | Ca2+ (A) | Ca2+ (A) | |||
| HOH 35 | O | |||||||
| Site 5 | Asp199 [B] | O1 | Ca2+ (B) | Ca2+ (A, B) | Ca2+ (B) | Ca2+ (B) | ||
| HOH 23 | O | |||||||
| Site 6 | Asp219 [A, B, C] | O1 | Ca2+ (A, B, C) | Ca2+ (A, B, C) | Ca2+ (A, B, C) | Ca2+ (A, B, C) | Sr2+ (A, B, C) | Sr2+ (A) |
| Asp220 [A, B, C] | O1 | |||||||
| HOH 15 | O | |||||||
| Site 7 | Asp291 [A*, B, C*] | O1 | Ca2+ (A/A*, B/B*, C/C*) | Ca2+ (A/A*, B/B*, C/C*) | Ca2+ (A/A*, B/B*, C/C*) | Ca2+ (A/A*, B/B*, C/C*) | Sr2+ (A/A*, B/B*, C/C*) | Ca2+ (B/B*) |
| Glu295 [A*, B, C*] | O1 | |||||||
| Glu352 [A, B*, C] | O1 | |||||||
| HOH 14 | O | |||||||
| Site 8 | Gln186 [A, C] | O | Cs+ (A, C) | Cs+ (A, C) | Cs+ (A) | |||
| Thr188 [A, C] | O | |||||||
| Trp189† [A, C] | C2, C2, C3, C2, C3, C2 | |||||||
| HOH 01 | O | |||||||
The aromatic ring of Trp189 interacts with Cs+ by a cation interaction.