Table 2.
Comparative analyses of parental and progeny strains of P. chrysogenum.
| Compared strains reads of mapped to | Resulting coverage | Analysis performed | High-quality SNPsa | |
|---|---|---|---|---|
| Pc3 | P2niaD18 | 31.4 | SNP calling and construction of Pc3 consensus sequence | 27,271 |
| AS25 | P2niaD18 | 22.2 | SNP calling to predict parental SNPs of AS25–3 | 21,133 |
| AS25 | Pc3 scaffolds | 22.8 | SNP calling | 397 |
| AS25-3 | P2niaD18 | 27.8 | SNP calling and construction of AS25–3 consensus sequence | 22,430 |
| AS25-3 | AS25 consensus | 28.0 | SNP calling | 11,816 |
a
SNPs with a quality score greater than 50 and an allele frequency of 1.0.