Skip to main content
. 2015 Feb 17;43(5):2813–2828. doi: 10.1093/nar/gkv106

Table 1. DDX1 nucleotide binding and hydrolysis.

Equilibrium titrations (μM) (μM)
Kd,mantADP 0.12 ± 0.02 Figure 3a Kd,mantADP (K52A) 31 ± 5 Figure 3b
Kd,mantdADP 0.12 ± 0.03 Supplementary Figure S2
Kd,ADP 0.12 ± 0.03 Figure 3c Kd,ATP 72 ± 15 Figure 3d
Kd,AppNHp 493 ± 68 Figure 3e Kd,AppCH2p 284 ± 3 Figure 3f
Transient kinetics kon (μM−1s−1) koff (s−1) (μM)
mantADP 0.95 ± 0.12 0.15 ± 0.0004 Kd,calc (ratio) 0.16 ± 0.21 Figure 4a
mantdADP 0.82 ± 0.04 0.074 ± 0.0001 Kd,calc (ratio) 0.09± 0.01 Figure 4b
RNA-dependent nucleotide binding (μM) (μM)
Kd(RNA),mantdADP 0.09 ± 0.02 Figure 5a Kd(RNA),ATP 5.0 ± 0.8 Figure 5b
Kd(RNA),AppNHp 18 ± 4 Figure 5c Kd(RNA),AppCH2p 14 ± 5 Figure 5d
RNA binding (μM) (μM)
Kd,RNA 2.9 ± 0.9 Kd(AppNHp),RNA 0.4 ± 0.1 Figure 5f
ATP hydrolysis (μM) (s−1)
Km,ATP 1750 ± 330 kcat,ATP 0.096 ± 0.005 Figure 6a
Km(RNA),ATP 11.7 ± 1.3 kcat(RNA),ATP 0.168 ± 0.003 Figure 6c
(nM)
Km(10mM ATP),RNA 70 ± 21 kcat(10mM ATP),RNA 0.141 ± 0.006 Figure 6b
Km(6mM ATP),RNA 107 ± 16 kcat(6mM ATP),RNA 0.168 ± 0.004 Figure 6b
Km(1mM ATP),RNA 257 ± 70 kcat(1mM ATP),RNA 0.222 ± 0.014 Figure 6b

Molecules in subscript and parentheses next to an affinity constant indicate the respective molecule that is present at saturating concentrations. The errors represent the standard error from the fits.