Table 1. DDX1 nucleotide binding and hydrolysis.
| Equilibrium titrations | (μM) | (μM) | |||
|---|---|---|---|---|---|
| Kd,mantADP | 0.12 ± 0.02 | Figure 3a | Kd,mantADP (K52A) | 31 ± 5 | Figure 3b |
| Kd,mantdADP | 0.12 ± 0.03 | Supplementary Figure S2 | |||
| Kd,ADP | 0.12 ± 0.03 | Figure 3c | Kd,ATP | 72 ± 15 | Figure 3d |
| Kd,AppNHp | 493 ± 68 | Figure 3e | Kd,AppCH2p | 284 ± 3 | Figure 3f |
| Transient kinetics | kon (μM−1s−1) | koff (s−1) | (μM) | ||
| mantADP | 0.95 ± 0.12 | 0.15 ± 0.0004 | Kd,calc (ratio) | 0.16 ± 0.21 | Figure 4a |
| mantdADP | 0.82 ± 0.04 | 0.074 ± 0.0001 | Kd,calc (ratio) | 0.09± 0.01 | Figure 4b |
| RNA-dependent nucleotide binding | (μM) | (μM) | |||
| Kd(RNA),mantdADP | 0.09 ± 0.02 | Figure 5a | Kd(RNA),ATP | 5.0 ± 0.8 | Figure 5b |
| Kd(RNA),AppNHp | 18 ± 4 | Figure 5c | Kd(RNA),AppCH2p | 14 ± 5 | Figure 5d |
| RNA binding | (μM) | (μM) | |||
| Kd,RNA | 2.9 ± 0.9 | Kd(AppNHp),RNA | 0.4 ± 0.1 | Figure 5f | |
| ATP hydrolysis | (μM) | (s−1) | |||
| Km,ATP | 1750 ± 330 | kcat,ATP | 0.096 ± 0.005 | Figure 6a | |
| Km(RNA),ATP | 11.7 ± 1.3 | kcat(RNA),ATP | 0.168 ± 0.003 | Figure 6c | |
| (nM) | |||||
| Km(10mM ATP),RNA | 70 ± 21 | kcat(10mM ATP),RNA | 0.141 ± 0.006 | Figure 6b | |
| Km(6mM ATP),RNA | 107 ± 16 | kcat(6mM ATP),RNA | 0.168 ± 0.004 | Figure 6b | |
| Km(1mM ATP),RNA | 257 ± 70 | kcat(1mM ATP),RNA | 0.222 ± 0.014 | Figure 6b | |
Molecules in subscript and parentheses next to an affinity constant indicate the respective molecule that is present at saturating concentrations. The errors represent the standard error from the fits.