TABLE 1.
Subtype | Metal(s) | Metal position(s) | Representative PDB code(s) | Residue(s)a in strand: |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | ||||
I | Zn, Ni | α, β | 1HZY, 3MTW | HxH | K | H | H | D | |||
II | Zn | α, β | 1BF6 | HxH | E | H | H | D | |||
III | Zn, Fe | α | 1A4M, 4DZH | HxH | H | hc | D | ||||
IV | Fe | β | 1O12 | hxhb | E | H | H | dc | |||
V | Zn | β | 1M7J | hxhb | C | H | H | dc | |||
VI | Zn | α, β | 1ITQ | HxD | E | H | H | dc | |||
VII | 1J5S | HxH | H | dc | |||||||
VIII | Znd | β | 4WGX, 4WHB | NxH | kc | H | hc | D | |||
IX | Zn | α | 3LS9 | HxH | H | hc | T |
Uppercase amino acid code letters indicate ligands that fulfill their characteristic roles; lowercase letters indicate amino acids that differ from these roles. Table modified from Khurana et al. (6).
These residues are present in the active site but do not appear to ligate a metal. In some cases, they can accommodate a second metal ion, but it is not required for catalysis.
Hydrogen bonds link these residues to the hydrolytic water molecule.
Despite the previous classification of subtype VIII member MolA as a Co metalloenzyme (7), we have concluded that MolA is more likely to be a Zn metalloenzyme.