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. 2015 Mar 1;29(5):538–554. doi: 10.1101/gad.252767.114

Figure 4.

Figure 4.

VL30 reactivation is associated with partial loss of DNA methylation. (A) Bisulfite sequencing analysis of VL30-pro ERVs in Zfp809GT MEFs. Full and empty circles represent methylated and unmethylated CpG sites, respectively. (B) qMSP analysis of Zfp809GT MEFs. Graphs show the genomic occurrence of unmethylated VL30-pro elements as percentage of methylated VL30-pro elements (n = 3 technical replicates). Error bars represent SD. (C) qMSP analysis was performed as above but with genomic DNA isolated from tissues of adult wild-type and Zfp809GT/GT mice. (D) qMSP analysis of MEF and ESC DNA after ChIP with the indicated antibodies. Graphs show the occurrence of unmethylated VL30-pro elements as percentage of methylated VL30-pro elements (n = 3 technical replicates). Error bars represent SD. (E) Dual-luciferase assay of Zfp809GT/+ MEFs transfected with a single unmethylated or in vitro CpG methylated VL30-pro LTR (+PBS-pro) cloned into a CpG-free luciferase vector. LTR activity was normalized to CMV promoter activity of a cotransfected renilla luciferase plasmid and is displayed in arbitrary units (AU). Assay was performed in triplicates. Error bars represent SD.