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. 2015 Mar 13;9(3):e0003566. doi: 10.1371/journal.pntd.0003566

Fig 3. Distribution of the Reference Allele Frequency (RAF) in monkey-adapted strains sequenced to date.

Fig 3

The graph shows the number of variable positions (y-axis) in a given sample according to the proportion of reads carrying the reference (i.e., Salvador I) allele (x-axis, in %). For most monkey-adapted strains the distribution is U shaped consistent with the present of a single haploid clone. However, the RAF distributions for Mauritania-I (in dotted red) and Chesson (in dotted green) indicate the presence of a second clone. The RAF for the human isolates mentioned in the manuscript is presented in S1 Fig.