Table 1: Transcriptome statistics for Amoebozoa used in case study.

Taxon	ATCC	Contigs	SSU	Bacterial	Eukaryotic	Unknown	Genes
Filamoeba nolandi	50430	21671	17	2409	12205	7057	171
Pessonella sp.	PRA29	17104	31	1783	8695	6626	199
Trichosphaerium sp.	40318	22137	15	2252	9541	10344	35
Eukaryota sp. JRG-2011	50979	14754	33	1940	7303	5478	178
Stereomyxa ramosa	50982	21354	38	2141	9854	9321	210