Table 4. Homeobox enriched Regulatory Element Sequences in the promoter regions of tissue context dependent genes.

We used the Match ^TM algorithm and TRANSFAC matrices to predict regulatory element sequences within the promoter regions (+ 500 bp around the TSS) of 113 tissue context dependent genes. The binding factors, the nucleotide position frequency and sequence logo, and the source of extracted data (category column) such as ChIP-on-, SELEX or matrix compiled from individual genomic sites are shown.