Table 3.
The 50 features based on ChIP-seq intensity of four histone marks (H3K27ac, H3K4me1, H3K4me3 and H3K27me3) and RNA polymerase II phosphorylation at serine 5 (RNAP)
| No. | Histone | Description | Dir. | P value | Signif. |
|---|---|---|---|---|---|
| 20 | H3K27ac | mean(xt,1000) | + | 4.40E-245 | *** |
| 21 | mean(xt,500) | - | 7.63E-03 | ** | |
| 22 | mean(xt,100) | - | 1.59E-21 | *** | |
| 23 | mean(xt,50) | + | 2.41E-06 | *** | |
| 24 | mean(xt,10) | - | 2.09E-01 | ||
| 25 | mean(xt+1,1000)-mean(xt,1000) | - | 1.62E-04 | *** | |
| 26 | mean(xt+1,500)-mean(xt,500) | - | 9.25E-01 | ||
| 27 | mean(xt+1,100)-mean(xt,100) | - | 1.03E-03 | ** | |
| 28 | mean(xt+1,50)-mean(xt,50) | + | 6.40E-04 | *** | |
| 29 | mean(xt+1,10)-mean(xt,10) | - | 1.33E-01 | ||
| 30 | H3K4me1 | mean(xt,1000) | + | 9.27E-01 | |
| 31 | mean(xt,500) | + | 2.04E-07 | *** | |
| 32 | mean(xt,100) | + | 1.04E-01 | ||
| 33 | mean(xt,50) | - | 8.89E-01 | ||
| 34 | mean(xt,10) | - | 3.06E-01 | ||
| 35 | mean(xt+1,1000)-mean(xt,1000) | - | 1.21E-56 | *** | |
| 36 | mean(xt+1,500)-mean(xt,500) | + | 2.42E-17 | *** | |
| 37 | mean(xt+1,100)-mean(xt,100) | + | 4.97E-05 | *** | |
| 38 | mean(xt+1,50)-mean(xt,50) | - | 4.04E-01 | ||
| 39 | mean(xt+1,10)-mean(xt,10) | + | 8.39E-01 | ||
| 40 | H3K4me3 | mean(xt,1000) | - | 3.34E-91 | *** |
| 41 | mean(xt,500) | + | 2.34E-32 | *** | |
| 42 | mean(xt,100) | + | 1.28E-02 | * | |
| 43 | mean(xt,50) | - | 8.41E-01 | ||
| 44 | mean(xt,10) | + | 7.33E-01 | ||
| 45 | mean(xt+1,1000)-mean(xt,1000) | - | 3.73E-23 | *** | |
| 46 | mean(xt+1,500)-mean(xt,500) | + | 3.82E-01 | ||
| 47 | mean(xt+1,100)-mean(xt,100) | + | 3.15E-04 | *** | |
| 48 | mean(xt+1,50)-mean(xt,50) | + | 9.68E-01 | ||
| 49 | mean(xt+1,10)-mean(xt,10) | - | 7.65E-01 | ||
| 50 | H3K27me3 | mean(xt,1000) | + | 1.61E-15 | *** |
| 51 | mean(xt,500) | - | 1.83E-27 | *** | |
| 52 | mean(xt,100) | + | 7.01E-02 | ||
| 53 | mean(xt,50) | - | 2.04E-01 | ||
| 54 | mean(xt,10) | - | 8.98E-02 | ||
| 55 | mean(xt+1,1000)-mean(xt,1000) | + | 1.77E-08 | *** | |
| 56 | mean(xt+1,500)-mean(xt,500) | - | 9.39E-05 | *** | |
| 57 | mean(xt+1,100)-mean(xt,100) | + | 2.15E-01 | ||
| 58 | mean(xt+1,50)-mean(xt,50) | - | 3.05E-01 | ||
| 59 | mean(xt+1,10)-mean(xt,10) | - | 4.10E-01 | ||
| 60 | RNAP | mean(xt,1000) | - | 0.00E + 00 | *** |
| 61 | mean(xt,500) | + | 1.82E-105 | *** | |
| 62 | mean(xt,100) | + | 1.04E-13 | *** | |
| 63 | mean(xt,50) | - | 1.54E-01 | ||
| 64 | mean(xt,10) | + | 9.46E-01 | ||
| 65 | mean(xt+1,1000)-mean(xt,1000) | - | 6.44E-166 | *** | |
| 66 | mean(xt+1,500)-mean(xt,500) | + | 1.98E-31 | *** | |
| 67 | mean(xt+1,100)-mean(xt,100) | + | 5.17E-03 | ** | |
| 68 | mean(xt+1,50)-mean(xt,50) | - | 4.77E-01 | ||
| 69 | mean(xt+1,10)-mean(xt,10) | + | 1.96E-01 |
*: 0.01 ≤p value < 0.05; **: 0.001≤p value < 0.01; ***: p value < 0.001.