Figure 2.

Recombination frequencies and allele frequencies of Arabidopsis chromosomes (I, II and IV) carrying large chromosomal deletions or putative inversions. Sections a, c and e show RF over the length of the respective deletion (Δ) or putative inversion (↔) chromosomes (M2→). In the M2 chromosome bars blue sections indicate heterozygous presence of SNPs while red sections show regions of LOH indicating the presence of deletions. Sections b, d and f show col-0 allele frequency over this same length of chromosome. Sections g, h and I show average recombination frequency over the whole chromosomes, their North and South arms. The legends specify the positions of identified deletions and/or inferred putative inversions carried on the respective chromosomes. Black graphs and bars represent data from 3 independent control individuals. Other colors refer to data collected from individual aberrant chromosomes. To be noted in these figures are: zero RF at positions of deletions or putative inversions; upregulations of RF up to 300% of WT in affected chromosomes; Col-0 allele frequency at 0,5 at sites of deletions; variable averages of RF in North and South arms of chromosomes while Whole chromosome RF is mostly comparable to control levels; variable positioning of upregulation in respect to aberration and absence of effects in chromosome 2 and 4 North arm deletions.