Table 2.
Complete genome constellations for the study strains displaying mixed/co-infected genotypes.
| STRAIN NAME | 1COMPLETE GENOTYPE CONSTELLATION | ASSIGNED GENOGROUP | 2GENOME SEGMENTS WITH > 2 SEQUENCES |
|---|---|---|---|
| RVA/Human-wt/SEN/MRC-DPRU4680/2010/G1G6P[8] | G1,G6-P[8]-I1,I2-R1,R2-C2-M1-A1,A2-N1,N1,N2-T1,T1,T2-E1,E2-H1 | Wa-like/DS-1-like | 1, 5, 6, 7, 8, 9 and 10 |
| RVA/Human-wt/ZAF/MRC-DPRU1893/2009/G8P[6] | G8-P[6]-I2,I2-R2,R1-C2-M2-A2-N2,N1-T2,T2-E2,E2-H2 | DS-1-like | 1, 6, 7, 8 and 10 |
| RVA/Human-wt/ZAF/MRC-DPRU228/2009/G2G1P[6] | G2,G1-P[6]-I2-R2-C2-M2-A2-N2-T2-E2-H2 | DS-1-like | 9 |
| RVA/Human-wt/CMR/MRC-DPRU3046/XXXX/G2G12P[4] | G2,G12-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2 | DS-1-like | 9 |
| RVA/Human-wt/BWA/MRC-DPRU2605/2007/G6G8P[6] | G6,G8-P[6]-I2-R2-C2-M2-A2-N2-T2-E2-H2 | DS-1-like | 9 |
| RVA/Human-wt/SWZ/MRC-DPRU4390/2010/G8G9P[6] | G8,G9P[6]-I2-R2-C2-M2-A2-N2,N1-T2-E2-H2 | DS-1-like | 8 and 9 |
| RVA/Human-wt/ZAF/MRC-DPRU1255/2005/G9G12P[6] | G9,G12-P[6]-I1-R1-C1-M1-A1,A1-N1-T1-E1-H1 | Wa-like | 5 and 9 |
| RVA/Human-wt/ZAF/MRC-DPRU2716/2008/G8P[4]P[8] | G8-P[4],P[8]-I2-R2-C2-M2-A2-N2-T2-E2-H2 | DS-1-like | 4 |
| RVA/Human-wt/ZAF/MRC-DPRU1195/2009/G2P[6]P[8] | G2-P[6],P[8]-I2-R2-C2-M2,M1-A2-N2-T2-E2-H2 | DS-1-like | 3 and 4 |
| RVA/Human-wt/ZAF/MRC-DPRU309/2010/G12P[8] | G12-P[8]-I1-R1-C1,C2-M1-A1,A2-N1,N2-T1-E1,E2-H1 | Wa-like | 2, 5, 8 and 10 |
| RVA/Human-wt/ZAF/MRC-DPRU1491/2010/G2P[4]P[8] | G2-P[4],P[8]-I2-R2-C2,C1-M2,M1-A2-N2-T2-E2-H2 | DS-1-like | 2, 4 and 3 |
| RVA/Human-wt/ZWE/MRC-DPRU1158/XXXX/G2G9P[6] | G2,G9-P[6]-I2-R2,R2-C2,C2-M2,M2-A2,A2-N2,N2-T2-E2,E2-H2 | DS-1-like | 1, 2, 3, 5, 8, 9 and 10 |
| RVA/Human-wt/ZWE/MRC-DPRU3348/2010/G9P[8] | G9-P[8]-I1-R1-C1-M1-A1-N1,N1,N2-T2-E1-H1 | Wa-like | 8 |
| RVA/Cow-wt/ZAF/MRC-DPRU3010/2009/G6P[5] | G6-P[5]-I2,I2-R2-C2-M2-A3-N2-T6-E2-H3,H3 | Bovine- like | 6 and 11 |
| RVA/Pig-wt/ZAF/MRC-DPRU1567/2008/G5P[6] | G5-P[6]-I5,I5-R1-C1,C1-M1,M1-A8,A8-N1,N1-T1,T7-E1-H1 | porcine-like | 2, 3, 5, 6, 7 and 8 |
1
VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5
2
The specific genome segments that had two or more sequences with the same or different genotypes are listed. The genome segments are numbered as follows: 1, VP1; 2, VP2; 3, VP3; 4, VP4; 5, NSP1; 6, VP6; 7, NSP3; 8, NSP2; 9, VP7; 10, NSP4; and 11, NSP5.
RVA, Group A rotavirus; wt, wildtype; ZAF, South Africa; CMR, Cameroon; BWA, Botswana; SEN, Senegal; SWZ, Swaziland; ZWE, Zimbabwe; MRC, Medical Research Council; DPRU, Diarrhoeal Pathogens Research Unit; VP, viral structural protein; NSP, viral non-structural protein.