Table 2. The distribution of NSSGs and outliers along Fst values between indica and temperate japonica, and the distribution of outliers along Fst values between Or-It and Or-IIIt.
| Fst values | No. of NSSGs between indica and temperate japonica 1 | No. of outliers between indica and temperate japonica | No. of outliers between Or-It and Or-IIIt 2 | ||
|---|---|---|---|---|---|
| Chr.1 | Chr.2–12 | Chr. 1 | Chr. 2–12 | ||
| 1 | 76 | 224 | 99 | 252 | 30 |
| 0.95-<1 | 68 | 310 | 93 | 429 | 66 |
| 0.9–0.95 | 19 | 162 | 34 | 240 | 64 |
| 0.8–0.9 | 34 | 68 | 13 | 85 | 22 |
| 0.7–0.8 | 34 | 4 | |||
| 0.6–0.7 | 21 | 7 | 1 | 3 | |
| 0.5–0.6 | 27 | 11 | 9 | 18 | 2 |
| 0.4–0.5 | 25 | 22 | 5 | 44 | 8 |
| 0.25–0.4 | 9 | 24 | 6 | 56 | 28 |
| Total | 313 | 832 | 161 | 1127 | 220 |
1Only the PSS with highest Fst was considered for some PSGs with more than one PSS.
2The number of the PSSs used to analyze O. rufipogon is 1354, including some of the PSSs from the PSGs with a synonymous site.