. 2015 Mar 16;10(3):e0119239. doi: 10.1371/journal.pone.0119239

Table 3. The PSGs of known function.

Locus ID	Gene	Isolation or expression	Characters	Functions	Ref^*
Os01t0678600	asl1	Mutant	Albino seedling lethality	Chloroplast development.	[34]
Os01t0695900	OsMYB4	Overexpression	Chilling and freezing tolerance	Cold tolerance	[35, 36]
Os01t0756700	OsKAT1	Overexpression	Salinity tolerance	Salinity tolerance in protoplast. Maintenance of cytosolic cation homeostasis.	[37]
Os01t0816100	OsNAC4	Knockdown	Blast resistance	Blast resistance. HR cell death.	[38–40]
Os01t0831000	lax	Mutant	Culm leaf, rachis-branches, lateral spikelet	Lateral organ development. Axillary meristem formation.	[41–44]
Os01t0867300	Osabf1	Mutant	Sensitive to drought and salinity treatment.	Drought and salinity tolerance.	[45]
Os01t0872800	OsPdk1	Mutant and overexpression	Overexpression of ospdk1 enhanced basal resistance against bacterial blight resistance and blast resistance	Ospdk1 participates in signal transduction through pathogen recognition	[46]
Os01t0929600	rtS	Knockdown	Sterility	Pollen development. Anther development.	[47]
Os02t0664000	OsGPX3	Knockdown	Dwarf and shorter root. Accumulation of H₂O₂	Root development. Dwarfism. H₂O₂ homeostasis.	[48]
Os02t0766700	OsbZIP23	Mutant and overexpression	Decreased sensitivity to ABA and tolerance to salinity and drought stress.	Drought and salinity tolerance. ABA sensitivity.	[49]
Os03t0119966	rim1	Mutant	Rice dwarf virus resistance.	Rice dwarf virus resistance.	[50]
Os03t0285800	OsMAPK5 or OsMPK3	Knockdown and Overexpression	Bacterial blight and blast resistance; cold, drought and salinity tolerance	Positively regulate response to biotic and abiotic stress, and JA pathway	[51–55]
Os03t0821300	xb15	Mutant	Bacterial blight resistance	Resistance to Xoo. Regulation of cell death.	[56]
Os05t0420300	serf1	Mutant	Sensitive to salt stress	Salinity tolerance.	[57]
Os06t0184100	DPL2	Natural variation	Sterility	Hybrid sterility. Pollen germination. Interaction with DPL1	[58]
Os06t0213100	S5	Natural variation	Sterility	Single locus hybrid sterility.	[33]
Os06t0354700	nyc3	Mutant	Stay green	Leaf senescence. Chlorophyll degradation.	[59]
Os06t0665400	apo1 or SCM2	Mutant and natural variation	Grain number. Lodging resistance	Floral organ identity; panicle branching; culm strength	[60–63]
Os06t0712700	spw1 or OsMADS16	Mutant and overexpression	Alter floral organ	Floral organ formation.	[64, 65]
Os06t0724900	ila1	Mutant	Increase leaf angle	Abnormal vascular bundle formation and cell wall composition in the leaf lamina joint.	[66]
Os07t0687700	rTGA2.1	Knockdown	Bacterial blight resistance and reduced plant stature	Resistance to Xanthomonas oryzae pv. Oryzae. Growth retardation.	[67]
Os08t0139000	OsDEG10	Knockdown	Sensitive to high light and cold stresses	High-light and cold tolerance.	[68]
Os08t0522400	OsAPx-R	Knockdown	Dwarf	Delay development and disturb steady state of the antioxidant	[69]
Os09t0439200	OsJAZ8	Overexpression	Bacterial blight resistance	JA induced resistance to Xanthomonas oryzae pv. Oryzae.	[70]
Os09t0441900	DEP1	Natural variation	Dense and erect panicle.	Enhance meristematic activity. Conferring cadmium tolerance	[71, 72]
Os09t0507200	OsMADS8	Knockdown	Panicle flower	Floral organ formation.
Os09t0522000	OsDREB1B	Overexpression	Cold, drought and salinity tolerance	Regulators of the abiotic stress	[73–76]
Os09t0537700	OsRNS4	Overexpression	Salinity tolerance	Salinity tolerance. Positive regulation in ABA response	[77]
Os12t0572800	mel2	Mutant	Developmental aberration of germline and nursery cells	Regulate the premeiotic G1/S-phase transition of male and female germ cells,	[78]

*reference