Table 4. Coding regions and their parsimony-informative rate.
No. | Region | Length | Aligned length | Conserved sites | No. Pars. uninf. | Pars. inf. | Pars.inf. % | C.I. | R.I. |
---|---|---|---|---|---|---|---|---|---|
1 | accD | 1530 | 1610 | 1414 | 130 | 66 | 4.10 | 0.91 | 0.79 |
2 | ccsA | 969 | 975 | 859 | 63 | 53 | 5.44 | 0.88 | 0.79 |
3 | cemA | 690 | 690 | 632 | 40 | 18 | 2.61 | 0.94 | 0.85 |
4 | clpP | 2020 | 2127 | 1894 | 144 | 89 | 4.18 | 0.9 | 0.81 |
5 | matK | 1521 | 1527 | 1342 | 119 | 66 | 4.32 | 0.94 | 0.88 |
6 | ndhA | 2152 | 2307 | 2015 | 190 | 102 | 4.42 | 0.90 | 0.77 |
7 | ndhI | 501 | 501 | 470 | 18 | 13 | 2.59 | 0.92 | 0.87 |
8 | ndhK | 678 | 678 | 592 | 75 | 11 | 1.62 | 0.95 | 0.67 |
9 | petB | 1413 | 1444 | 1285 | 103 | 56 | 3.88 | 0.88 | 0.74 |
10 | petD | 1188 | 1269 | 1160 | 58 | 51 | 4.02 | 0.92 | 0.88 |
11 | rbcL | 1434 | 1458 | 1340 | 52 | 66 | 4.53 | 0.78 | 0.67 |
12 | rpoA | 1008 | 1014 | 896 | 93 | 25 | 2.47 | 0.92 | 0.72 |
13 | rpoC1 | 2802 | 2918 | 2030 | 778 | 110 | 3.77 | 0.94 | 0.66 |
14 | rpoC2 | 4158 | 4176 | 3763 | 288 | 125 | 2.99 | 0.92 | 0.79 |
15 | rps16 | 1109 | 1238 | 1034 | 129 | 75 | 6.06 | 0.92 | 0.82 |
16 | ycf1 | 5304 | 5568 | 3585 | 1505 | 478 | 8.58 | 0.89 | 0.60 |
17 | ndhD | 1503 | 1539 | 1420 | 79 | 40 | 2.60 | 0.85 | 0.64 |
18 | ndhF | 2250 | 2260 | 1983 | 173 | 104 | 4.60 | 0.89 | 0.78 |
19 | rpoB | 3183 | 3183 | 2965 | 140 | 76 | 2.39 | 0.91 | 0.82 |
Length: refers to sequence length in Cynara cardunculus var. scolymus
Aligned length: refers to the alignment of nine Asteraceae considered in the comparative analysis (see Materials and Methods)
Pars.: parsimony
Uninf. uninformative
Inf.: informative
C.I.: consistency index
R.I.: retention index