Table 2. Genes in the GRC.
| Gene a | Description b | E-value c | Site d | ORF e | RS1 dN f | RS1 dS g | RS2 dN h | RS2 dS i | S1S2 dN j | S1S2 dS k |
|---|---|---|---|---|---|---|---|---|---|---|
| hyal | hyaluronidase | 1.00E-162 | Scaffold1 1520–1531k | 1479 | 0.68 | 3.71 | 0.68 | 3.92 | 0.51 | 3.52 |
| grcnc1 | noncoding | NA | Scaffold1 1534–1536k | 0 | NA | 2.69 | NA | 4.58 | NA | 3.68 |
| mlck | myosin light chain kinase | 2.00E-12 | Scaffold1 1541–1553k | 5604 | 0.46 | 4.06 | 0.29 | 2.3 | 0.43 | 2.59 |
| grcnc2 | noncoding | NA | Scaffold1 1571–1573k | 0 | NA | 7.07 | NA | 8.24 | NA | 4.21 |
| grcnc3 | noncoding | NA | Scaffold1 1573–1574k | 0 | NA | 7.92 | NA | 5.16 | NA | 5 |
| grcnc4 | noncoding | NA | Scaffold1 1574–1575k | 0 | NA | 4.15 | NA | 12.04 | NA | 10.71 |
| grcnc5 | noncoding | NA | Scaffold1 1607–1609k | 0 | NA | 1.57 | NA | 1.05 | NA | 1.95 |
| grctm1 | single-pass transmembrane | NA | Scaffold1 1610–1621k | 1002 | 0.64 | 0.19 | 0.26 | 0.19 | 0.64 | 0.38 |
| gcrnc6 | noncoding | NA | Scaffold1 1624–1626k | 0 | NA | 3.1 | NA | 1.93 | NA | 1.76 |
| grcnc7 | noncoding | NA | Scaffold1 1626–1627k | 0 | NA | 0.62 | NA | 1.86 | NA | 2.48 |
| grcnc8 | noncoding | NA | Scaffold1 1786–1787k | 0 | NA | NA | NA | NA | NA | NA |
| grctm2 | receptor-type tyrosine-protein phosphatase | 1.00E-28 | Scaffold1 1792–1806k, Scaffold7477 2–3k | 2013 | 10.75 | 13.26 | 2.44 | 3.6 | 10.91 | 13.45 |
| grctm3 | chitinase | 6.00E-12 | Scaffold1 1821–1837k | 864 | 1.63 | 3.38 | 7.1 | 16.5 | 7.38 | 17.79 |
| grcnc9 | noncoding | NA | Scaffold1 1865–1867k | 0 | NA | 5.36 | NA | 4.02 | NA | 3.51 |
| grctm4 | chitinase | 5.00E-13 | Scaffold1 1863–1877k | 1104 | 4.35 | 5.52 | 6.37 | 6.35 | 5.55 | 6.06 |
| grcnc10 | noncoding | NA | Scaffold1 1884–1885k | 0 | NA | 4.06 | NA | 7.55 | NA | 6.53 |
| grctm5 | chitinase | 9.00E-14 | Scaffold1 1886–1895k | 855 | 5.53 | 7.51 | 7.46 | 7.9 | 6.94 | 6.92 |
| grctm6 | single-pass transmembrane | NA | Scaffold1 1906–1936k | 2013 | 8.74 | 5.66 | 7.85 | 3.46 | 8.57 | 6.16 |
| grctm7 | single-pass transmembrane | NA | Scaffold1 1922–1934k | 1359 | 8.1 | 3.52 | 5.44 | 8.4 | 9.36 | 11.39 |
| grcnc12 | noncoding | NA | Scaffold4 1497–1500k | 0 | NA | 0.66 | NA | 0.9 | NA | 1.56 |
| hely | hemolysin | 3.00E-16 | Scaffold4 1477–1501k | 2385 | 0.32 | 0.52 | 0.22 | 1.17 | 0.32 | 0.91 |
| pspk | paraspeckle component | 5.00E-89 | Scaffold4 1441–1456k | 2028 | 0.19 | 1.27 | 0 | 0.59 | 0.19 | 0.85 |
| znf2 | zinc finger | 0 | Scaffold4 1406–1423k | 5400 | 0.35 | 1.26 | 0.52 | 0.81 | 0.4 | 1.17 |
| znf1 | zinc finger | 1.00E-130 | Scaffold4 1395–1403k | 2256 | 0.28 | 1.31 | 0.5 | 1.07 | 0.67 | 1.39 |
| adprf | ADP ribosylation factor GTPase-activating protein | 5.00E-151 | Scaffold4 1368–1387k | 1416 | 0 | 1.52 | 0.18 | 0.88 | 0.18 | 1.09 |
| grcnc11 | noncoding | NA | Scaffold4 1365–1366k | 0 | NA | 1.22 | NA | 0.91 | NA | 1.11 |
| plmt | palmitoyltransferase | 4.00E-68 | Scaffold7477 5–8k | 903 | 1.28 | 3.71 | 0.71 | 6.44 | 0.99 | 5.44 |
agene name following Bayne [70]
bfor coding genes, putative protein description based on BLAST hits and secondary structure
clowest E-value for protein sequence BLASTed against NCBI non-redundant protein sequences. "NA" means non-coding or no E-values < 10-2
dapproximate location in B. glabrata reference genome v. BglaB1 via BLAST (site position in kb)
esize of open reading frame in bp
fnonsynonymous divergence between R and S1 (%)
gsilent (synonymous and noncoding) divergence between R and S1 (%)
hnonsynonymous divergence between R and S2 (%)
isilent (synonymous and noncoding) divergence between R and S2 (%)
jnonsynonymous divergence between S1 and S2 (%)
ksilent (synonymous and noncoding) divergence between S1 and S2 (%)