Table 2.
Candidate genes for Lj-miR156 derived from psRNATarget prediction
| Targets (DFCI gene index) | Alignment | Annotation | |
|---|---|---|---|
| TC70253 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 133 GUGCUCUCUCUCUUCUGUCA 152 |
Homologue to SPL protein 13 | |
| TC70719 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 155 GUGCUCUCUCUCUUCUGUCA 174 |
Homologue to SPL | |
| AV417559 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 259 GUGCUCUCUCUCUUCUGUCA 278 |
Homologue to SPL | |
| AU089181 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 293 GUGCUCUCUAUCUUCUGUCA 312 |
Homologue to SPL | |
| TC69981 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 1013 GUGCUCUCUAUCUUCUGUCA 1032 |
Homologue to SPL | |
| TC57859 |
miRNA 19 ACGAGUGAGA-GAAGACAGU 1 Target 693 UGCUCAUUCUUCUUCUGUCA 712 |
Homologue to WD-40 | |
| TC60868 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 660 AAGCUCUCUCUCUUCUGUCA 679 |
Homologue to SPL | |
| TC67580 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 586 GUGCUGACUCUUUUCUGUGA 605 |
Homologue to RNA-direct DNA polymerase | |
| TC61877 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 843 GUGUUCAAGCUCUUUUGUCA 862 |
Homologue to transport protein | |
| TC78289 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 291 GUGUUCAAGCUCUUUUGUCA 310 |
Homologue to transport protein | |
| GO026435 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 444 AUGCUCUCUAUCUUCUGUCA 463 |
Homologue to SPL | |
| CN825561 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 556 AUGCUCUCUAUCUUCUGUCA 575 |
Homologue to SPL | |
| GO023872 |
miRNA 20 CACGAGUGAGAGAAGACAGU 1 Target 192 GUGGUCACUCUCUUUUUUCA 211 |
Homologue to histidine phospho-transfer Protein |
Unmatched nucleotides are underlined