Table 3. Statistic of significant SNPs in LW.
| SNP | SSC | N A | MAF B | Var C | p-value D | Cluster |
|---|---|---|---|---|---|---|
| ALGA0018160 | 3 | 738 | 2.0 | 3.4 | 0.001** | LW_2a |
| ASGA0023685 | 5 | 2272 | 20.9 | 0.8 | 0.02 | LW_1 |
| 5 | 1719 | 22.3 | 1.2 | 0.01 | LW_2 | |
| MARC0103593 | 5 | 2272 | 21.1 | 0.8 | 0.05 | LW_1 |
| 5 | 1719 | 22.5 | 1.1 | 0.03 | LW _2 | |
| MARC0104982 | 5 | 738 | 0.6 | 2.5 | 0.03 | LW _2a |
| ALGA0055303 | 9 | 1719 | 0.6 | 1.3 | 0.004 | LW _2 |
| 9 | 738 | 0.6 | 4.6 | <0.001** | LW _2a | |
| ASGA0046811 | 10 | 738 | 21.3 | 2.6 | 0.02 | LW _2a |
| MARC0070030 | 10 | 2272 | 0.8 | 0.9 | 0.007 | LW _1 |
| 10 | 1719 | 0.8 | 1.1 | 0.01 | LW _2 | |
| MARC0043480 | 10 | 938 | 16.3 | 2.2 | 0.01 | LW _2b |
| DRGA0010601 | 10 | 938 | 17.6 | 1.9 | 0.04 | LW _2b |
| ASGA0090608 | 10 | 738 | 5.7 | 2.4 | 0.05 | LW _2a |
| H3GA0030853 | 11 | 1718 | 1.9 | 1.1 | 0.03 | LW _2 |
| MARC0006510 | 11 | 738 | 0.6 | 3.0 | <0.001** | LW _2a |
| ASGA0079878 | 18 | 738 | 0.6 | 3.5 | 0.0004** | LW _2a |
A Number of analysed animals,
B minor allele frequency (MAF),
C σ2 y* = Variance of the pre-corrected EBVs (Var, %),
D nominal p-value and corresponding significant thresholds:
**genome-wide significant (pgem < 0.05).