Table 5. Results of annotation for all analyses with previously reported candidate genes, QTL or association in SNP region.
| SSC | SNP | Position (Mbp) | Genes in SNP Region * | Previously reported QTL or Associations in SNP region ** | Cluster |
|---|---|---|---|---|---|
| 3 | ALGA0018160 | 27925965 | - | NBA, CLN | LW_2a |
| 5 | ASGA0023685 | 876762 | PPARα, Fbln1 | NSB | LW_1,LW_2 |
| 5 | MARC0103593 | 961240 | PPARα, Fbln1 | NSB | LW_1,LW_2 |
| 5 | MARC0104982 | 91550413 | VEZT | - | LW_2a |
| 7 | CASI0006750 | 115511369 | FLRT2 | - | LR_3 |
| 9 | MARC0070952 | 14861213 | - | TNB | LR_2 |
| 9 | ALGA0055303 | 139041276 | PTGS2,PLA2G4A | CLN | LW_2,LW_2a |
| 10 | ASGA0046811 | 18203672 | AHCTF1 | - | LW_2a |
| 10 | MARC0070030 | 32526661 | - | CLN | LW_1,LW_2 |
| 10 | MARC0043480 | 63867699 | ITGB1 | CLN, FSH | LW_2b |
| 10 | DRGA0010601 | 63869377 | ITGB1 | CLN, FSH | LW_2b |
| 10 | ASGA0090608 | 76815569 | CTSL | - | LW_2a |
| 11 | H3GA0030853 | 82720 | - | - | LW_2 |
| 11 | H3GA0030985 | 3733271 | FLT1 | - | LR_1 |
| 11 | MARC0006510 | 74240078 | - | NSB | LW_2a |
| 16 | ASGA0072103 | 6470509 | - | NBA | LR_3,LR_3b |
| 18 | ASGA0079878 | 47312409 | - | NBA | LW_2a |
SSC = Sus scrofa; TNB = total number born; NBA = number born alive, NSB = number of stillborn piglets; CLN = corpus luteum number, FSH = plasma follicle-stimulating hormone.
* The declaration of gene symbols can be obtained from Ensembl or http://www.ncbi.nlm.nih.gov/gene.
** The QTL information was obtained using http://www.animalgenome.org/cgi-bin/gbrowse/pig/.