TABLE 4.
Single nucleotide polymorphisms specifically distinguishing the Iowa and Morgan strains
| SNP type and coordinate (Iowa) | Iowa locus or regiona | Product | Nucleotide in: |
Amino acid change in Morgan | |
|---|---|---|---|---|---|
| Iowa | Morgan | ||||
| Nonsynonymous | |||||
| 41166 | RrIowa_0056 | Hypothetical protein | G | T | P44T |
| 73049 | RrIowa_0101 | Hypothetical protein | G | A | P118S |
| 462800 | RrIowa_0554 | Hypothetical protein | C | T | A218T |
| 592024 | RrIowa_0716 | Hypothetical protein/AbrB family transcriptional regulator | C | T | V16I |
| 977093 | RrIowa_1246 | DNase, TatD family | G | T | H175N |
| 1037601 | RrIowa_1322 | Hypothetical protein | T | G | Y12S |
| 1045924 | RrIowa_1330 | Malonyl-CoA-acyl-carrier protein transacylaseb | A | G | I274V |
| 1180401 | RrIowa_1493 | Outer membrane protein A | C | T | D673G |
| Synonymous | |||||
| 163376 | RrIowa_0203 | Hypothetical protein/predicted nucleoside-diphosphate-sugar epim | G | A | |
| 424451 | RrIowa_0506 | TolA | G | A | |
| 425483 | RrIowa_0509 | Hypothetical protein | C | T | |
| 431074 | RrIowa_0512 | Type I protein secretion ATP-binding protein | T | C | |
| 645866 | RrIowa_0788 | Hypothetical protein | G | A | |
| 664744 | RrIowa_0808 | Pyruvate phosphate dikinase | G | A | |
| 852969 | RrIowa_1071 | ATP-dependent DNA helicase | C | T | |
| 1178379 | RrIowa_1493 | Outer membrane protein A | G | A | |
| Intergenic | |||||
| 227151 | Intergenic | T | G | ||
| 401017 | Intergenic | A | C | ||
| 425483 | Intergenic | C | T | ||
| 564723 | Intergenic | C | A | ||
| 713118 | Intergenic | G | A | ||
| 725479 | Intergenic | A | T | ||
| 825946 | Intergenic | C | T | ||
| 840609 | Intergenic | A | T | ||
| 841977 | Intergenic | G | A | ||
| 873138 | Intergenic | C | T | ||
| 967190 | Intergenic | G | A | ||
| 1002812 | Intergenic | G | A | ||
| 1067848 | Intergenic | G | A | ||
| 1162554 | Intergenic | G | A | ||
| 1204185 | Intergenic | T | C | ||
a
NCBI.
b
CoA, coenzyme A.