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. 2015 Mar 18;5:9236. doi: 10.1038/srep09236

Table 3. Number of candidate Indels filtered against several public variation databases.

Feature_Indel control:II-9 case:II-2 case:II-3 case:II-4 case:II-7
Total_Indels1 16173 15403 16053 15368 15772
Functional_Indels2 2053 1976 2058 1996 2089
Filtered_DBsnp 586 576 582 570 565
Filtered_DBsnp_1000gene 337 346 323 325 327
Filtered_DBsnp_1000gene_Hapmap 337 346 323 325 327
Filtered_DBsnp_1000gene_Hapmap_YH 335 344 321 324 325
Filtered_DBsnp_1000gene_Hapmap_YH_ II-93 0 159 147 146 151
Share_all_cases 15        
Housedatabase_filter 0        

1Total-Indels detection were performed on the targeted exome regions and flanking regions within 100 bp. Indel types include variants of frameshift, cds-Indel, spliceSite, 5-UTR, 3-UTR, intron, promoter, intergenic.

2Functional_Indels include variants of frameshift, cds-Indel, spliceSite.

3In this step, variants were filtered by mutations of healthy control: II-9.