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. 2015 Mar 4;2015:950737. doi: 10.1155/2015/950737

Table 4.

Overlapping results between the SNPs associated with back fat thickness as identified with the Ion Torrent sequencing data (P Fisher < 0.05) and those obtained in the genome wide association study (GWAS) reported by Fontanesi et al. [10] (P < 0.05, window = ±0.5 Mbp for each marker).

Chr. Marker PosM PGWAS PosSNP P Fisher *
1 ALGA0000009 52,297 2.75E − 03 68,514 2.86E − 02
1 ALGA0000014 79,763 1.74E − 05 68,514 2.86E − 02
6 M1GA0008302 787,265 1.65E − 06 873,061 1.28E − 02
6 M1GA0008318 945,991 4.41E − 04 873,061 1.28E − 02
6 M1GA0008329 996,248 9.35E − 05 873,061 1.28E − 02
9 DRGA0009307 17,138,159 8.66E − 04 16,885,924 2.81E − 02
12 DIAS0000309 48,865,200 9.96E − 04 48,937,212 2.63E − 02

*Only the top P Fisher for each marker is listed. All other data are presented in Table S5.

Chr. = chromosome; marker = marker in the Illumina PorcineSNP60 BeadChip; PosM = nucleotide position of the marker on the Sscrofa10.2 reference genome; P GWAS = P value of association in the GWAS; PosSNP = nucleotide position on the Sscrofa10.2 reference genome of the SNP having P Fisher < 0.05; P Fisher = P value of Fisher's test.