Anets |
All (apriori), various threshold measures |
Annotation mining |
GNU GPL |
16 |
http://sourceforge.net/projects/anets |
AGM |
All (apriori) |
Subgraph mining |
/ |
57 |
/ |
Apriori (Borgelt) |
All |
/ |
GNU GPL |
6, 94
|
http://www.borgelt.net/apriori.html |
Apriori (Goethals) |
All |
/ |
Research only |
6 |
http://adrem.ua.ac.be/∼goethals/software/ |
ARIA |
All (apriori), various verifications |
Annotation mining |
/ |
15 |
http://pedant.gsf.de/ARIA/index.htm |
Carpenter |
Closed |
Quantitative omics profiles |
GNU GPL |
29 |
http://www.borgelt.net/carpenter.html |
CBA |
All (apriori) |
Classifiers |
/ |
67 |
/ |
CMAR |
All (FP-growth) |
Classifiers |
/ |
68 |
/ |
Cobbler |
Closed |
Quantitative omics profiles |
/ |
40 |
/ |
CODENSE |
Coherent dense subgraphs |
Subgraph mining |
Research only |
62 |
http://zhoulab.usc.edu/CODENSE/ |
COLL |
All (apriori), chi-squared threshold pruning |
Annotation mining |
Open source |
3 |
http://datadryad.org/resource/doi:10.5061/dryad.nr353 |
COPS |
All (FP-tree), score threshold |
Biclustering |
Contact authors |
18 |
http://www.cos.uni-heidelberg.de/index.php/n.ha |
CPAR |
All |
Classifiers |
/ |
69 |
/ |
CPMine |
All (eclat), machine learning |
Structural patterns |
/ |
22 |
/ |
DeBi |
Maximal |
Biclustering |
Creative Commons 2.0 |
29 |
http://www.molgen.mpg.de/∼serin/debi/main.html |
Distiller |
Closed |
Quantitative omics profiles |
Academic use only |
49 |
http://homes.esat.kuleuven.be/∼kmarchal/Supplementary_Information_Lemmens_2008/startPage.html |
Eclat (Borgelt) |
All |
/ |
GNU GPL |
13, 94
|
http://www.borgelt.net/eclat.html |
FESP |
Emerging patterns |
Classifiers |
/ |
92, 93
|
/ |
Farmer |
Closed |
Quantitative omics profiles |
Research only |
41 |
http://www.sgi.com/tech/mlc/ |
FSG |
/ |
Subgraph mining |
/ |
58 |
/ |
FPGrowth |
All |
/ |
GNU GPL |
14 |
/ |
GenMax |
Maximal |
Quantitative omics profiles |
Research only |
36 |
http://www.cs.rpi.edu/∼zaki/www-new/pmwiki.php/ Software/Software |
GenMiner |
Closed |
Quantitative omics profiles |
Research only |
46 |
http://keia.i3s.unice.fr/?Logiciels_et_Implémentations___GenMiner |
gSpan |
All |
Subgraph mining |
Internal research only |
59 |
http://www.cs.ucsb.edu/∼xyan/software/gSpan.htm |
KRIMP |
Minimal descriptive length |
Future work |
|
83 |
http://adrem.ua.ac.be/∼jvreeken/prj/krimp/ |
MAFIA |
Maximal |
/ |
Contact authors |
95 |
http://sourceforge.net/projects/himalaya-tools/files/ |
MAGO |
Multilevel association rules |
Quantitative omics profiles |
/ |
47 |
/ |
MaxConf |
Closed |
Quantitative omics profiles |
Research only |
96 |
https://bitbucket.org/tara/fpm/src/5813e782542b?at=default |
MaxMiner |
Maximal |
Quantitative omics profiles |
/ |
35 |
/ |
Min-Ex |
δ-free itemsets |
Quantitative omics profiles |
/ |
32 |
/ |
MULE |
Maximal frequent connected subgraph |
Subgraph mining |
Research only |
4 |
http://compbio.case.edu/koyuturk/software/mule/ |
NetCAR |
Maximal frequent connected subgraph |
Classifiers |
Research only |
77 |
http://bioinformatics.oxfordjournals.org/content/24/13/1523.long |
PathFinder |
Large |
Subgraph mining |
/ |
64 |
/ |
REMMAR |
Shortest distance thresholding |
Quantitative omics profiles |
Research only |
48 |
http://websystem.csie.ncku.edu.tw/REMMAR_Program.rar |
TD-Close |
Closed |
Quantitative omics profiles |
/ |
42 |
/ |
TopKRGs |
Top-k |
Quantitative omics profiles |
/ |
43 |
/ |