Table 1.

Representative proteins identified in the Ni-NTA bound plasma proteins by LTQ-Orbitrap MS. Average unique peptides = average of all peptides identified. A complete list of proteins identified in each of the excised gel bands are provided in the supplemental table online.

Protein Name	Accession #	Avg Unique Peptides	Log(e)	1D gel Band #
Apolipoprotein B-100	Q9U	73	−201.53	1
Desmin	P17661	26	−55.72
Vimentin	P08670	4	−13.98
Fibronectin	P02751	16	−123.50	2
Keratin, type I cytoskeletal 9	P35527	8	−9.67
Non-muscle myosin heavy chain	Q99529	2	−7.30
Alpha-2-macroglobulin	Q9BQ22	75	−139.26	3
Ceruplasmin	Q6NSB2	3	−4.50
Rhotekin	Q9BST9	2	−5.90
Complement component C3	Q6LDJ0	33	−30.30	4
Kininogen-1	P01042	6	−8.22
Fibrinogen alpha chain	P02671	2	−2.96
ATP synthase subunit alpha	P25705	13	−25.65	5
Plasminogen	Q9UMI2	4	−17.00
Complement component 7	Q05CI3	3	−12.20
Serum Albumin	Q56G89	42	−119.84	6
Vitamin D-binding protein	P02774	3	−2.57
Serotransferrin	P02787	16	−44.60	7
Clusterin	P10909	2	−7.70
Apolipoprotein AI	Q6LEJ8	15	−14.41	8
Serum amyloid P-component	P02743	2	−9.10
Haptoglobin	Q14552	7	−25.00	9
Complement component C8 gamma chain	P07360	2	−10.50
Transthyretin	P02766	9	−21.20	10
Hemoglobin alpha 1 globin chain	Q9BX83	7	−6.44
Complement factor B (cDNA FLJ55673)	B4E1Z4	10	−17.53	11
Protein S100-A8	P05109	3	−14.00	12
Apolipoprotein A-II	P02652	2	−6.40	13