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. 2015 Mar 18;10(3):e0116092. doi: 10.1371/journal.pone.0116092

Table 5. STRING v9.1 analysis of the 27 proteins deregulated only in glia exposed to AD plasma (shown in Table 4 ).

for enrichment in gene ontology biological processes. Glucose metabolism was found to be the most significant biological process, and is also highlighted in the STRING network map (Fig. 5).

Molecular Function Enrichment GO_ID Term Number of Proteins p-value p-value FDR p-value Bonferroni
GO:0003723 RNA Binding 17 1.94E-12 5.34E-09 7.51E-09
GO:0044822 Poly(A) RNA Binding 16 2.75E-12 5.34E-09 1.07E-08
GO:0008379 Thioredoxin peroxidase activity 2 8.88E-06 9.22E-03 3.45E-02
GO:0003676 Nucleic acid binding 16 9.50E-06 9.22E-03 3.69E-02
GO:0051920 Peroxiredoxin activity 2 2.95E-05 2.29E-02 1.15E-01
Biological Process Enrichment GO_ID Term Number of Proteins p-value p-value FDR p-value Bonferroni
GO:0006006 Glucose metabolic process 9 1.42E-12 1.76E-08 1.76E-08
GO:0019318 Hexose metabolic process 9 7.28E-12 4.51E-08 9.02E-08
GO:0005996 Monosaccharide metabolic process 9 3.63E-11 1.50E-07 4.49E-07
GO:0046364 Monosaccharide biosynthetic process 6 2.23E-10 6.89E-07 2.75E-06
GO:0016051 Carbohydrate biosynthetic process 7 7.56E-10 1.87E-06 9.35E-06
GO:0006094 Gluconeogenesis 5 5.43E-09 1.12E-05 6.73E-05
GO:0019319 Hexose biosynthetic process 5 9.29E-09 1.64E-05 1.15E-04
GO:0042542 Response to hydrogen peroxide 4 2.30E-05 3.56E-02 2.85E-01
GO:0022614 Membrane to membrane docking 2 3.13E-05 4.30E-02 3.87E-01
GO:0016584 Nucleosome positioning 2 6.56E-05 8.12E-02 8.12E-01
Cellular Component Enrichment GO_ID Term Number of Proteins p-value p-value FDR p-value Bonferroni
GO:0070062 Extracellular vesicular exosome 17 1.04E-11 5.02E-09 1.51E-08
GO:0044421 Extracellular region part 18 1.23E-09 4.44E-07 1.77E-06
GO:0005576 Extracellular region 18 1.08E-07 3.06E-05 1.57E-04
GO:0031988 Membrane-bounded vesicle 15 1.27E-07 3.06E-05 1.84E-04
GO:0031982 Vesicle 15 1.83E-07 3.77E-05 2.64E-04
GO:0043233 Organelle lumen 16 2.50E-07 4.32E-05 3.62E-04
GO:0042470 Melanosome 5 2.98E-07 4.32E-05 4.32E-04
GO:0005829 Cytosol 15 1.22E-06 1.47E-04 1.77E-03
GO:0070013 Intracellular organelle lumen 13 5.33E-05 5.93E-03 7.71E-02
GO:0031254 Cell trailing edge 2 7.00E-05 6.76E-03 1.01E-01
GO:0001931 Uropod 2 7.00E-05 6.76E-03 1.01E-01
GO:0030016 Myofibril 4 1.41E-04 1.28E-02 2.05E-01
GO:0016323 Basolateral plasma membrane 4 1.51E-04 1.29E-02 2.19E-01
GO:0043292 Contractile fiber 4 1.66E-04 1.33E-02 2.40E-01
GO:0060205 Cytoplasmic membrane-bound vesicle lumen 3 2.64E-04 1.91E-02 3.82E-01
GO:0031983 Vesicle lumen 3 2.64E-04 1.91E-02 3.82E-01
GO:0031528 Microvillus membrane 2 2.98E-04 2.05E-02 4.31E-01
GO:0016023 Cytoplasmic membrane-bounded vesicle 7 3.68E-04 2.42E-02 5.32E-01
GO:0005719 Nuclear euchromatin 2 5.70E-04 3.43E-02 8.24E-01
GO:0000791 Euchromatin 2 7.98E-04 4.62E-02 1.00E+00