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Phylogenetic Bayesian analysis of the 33 Salmonella Manhattan sequenced genomes based on SNPs in first (A), second (B), third (C), and first plus second codon position (D) data sets. The posterior probabilities are indicated in each principal node of the tree. The scale bar units are the nucleotide substitutions per site. #, WGS analyses clustered isolate SM36 (pulsotype SXB_PR.0752) together with the isolates of the outbreak pulsotype (SXB_BS0003).
