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. 2015 Mar 18;53(4):1227–1238. doi: 10.1128/JCM.02930-14

TABLE 1.

Complete data set of Salmonella Manhattan isolates analyzed in this studya

Lab no. Isolate no. (this study) Date of isolation (DD/MM/YYYY) Isolation place (province) Matrix PFGE pulsotype
160969_3 SM1b 06/30/2009 Modena Human SXB_BS.0003
160969_5 SM2b 06/30/2009 Modena Human SXB_BS.0003
160969_6 SM3b 06/30/2009 Modena Human SXB_BS.0003
165051_2 SM4b 07/03/2009 Modena Human SXB_BS.0003
165051_3 SM5b 07/03/2009 Modena Human SXB_BS.0003
165051_5 SM6b 07/03/2009 Modena Human SXB_BS.0003
165051_7 SM7b 07/30/2009 Modena Human SXB_BS.0003
111113 SM8b 07/03/2009 Modena Human SXB_BS.0003
165051_11 SM9b 07/03/2009 Modena Human SXB_BS.0003
165051_12 SM10b 07/03/2009 Modena Human SXB_BS.0003
180073_1 SM11b 07/22/2009 Modena Human SXB_BS.0003
180073_2 SM12b 07/22/2009 Modena Human SXB_BS.0003
180073_3 SM13b 07/22/2009 Modena Human SXB_BS.0003
180073_4 SM14b 07/22/2009 Modena Human SXB_BS.0003
180073_6 SM15b 07/22/2009 Modena Human SXB_BS.0003
250920 SM42b 08/31/2009 Milano Pork SXB_BS.0003
227021 SM32b 05/06/2009 Milano Pork sausage SXB_BS.0003
188801 SM52b 05/06/2009 Milano Pork sausage SXB_BS.0003
216630_1 SM53b 09/03/2009 Modena Pork sausage SXB_BS.0003
216630_2 SM54b 09/03/2009 Modena Pork sausage SXB_BS.0003
226957 SM16 03/07/2006 Mantova Swine SXB_PR.0753
226963 SM17b 03/20/2006 Mantova Swine SXB_PR.0753
226972 SM19b 03/20/2006 Sondrio Pork salami SXB_PR.0753
226979_1 SM21b 07/31/2006 Cremona Swine gut SXB_BS.0003
226985 SM23b 08/03/2006 Milano Pork sausage SXB_BS.0003
226987 SM24b 08/03/2006 Milano Pork sausage SXB_BS.0003
226993 SM26 01/22/2007 Ravenna Hamburger SXB_BS.0003
226998 SM27b 06/29/2007 Milano Pork SXB_BS.0003
227002 SM28 09/18/2002 Pavia Surface water SXB_BS.0003
227009 SM29b 09/02/2002 Bologna Bovine sausage SXB_PR.0754
227015 SM31 09/11/2001 Pavia Surface water SXB_PR.0751
227033 SM35b 11/29/2008 Ravenna Swine stool SXB_BS.0003
227039 SM36b 09/30/2008 Brescia Swine stool SXB_PR.0752
227052 SM38b 09/24/2008 Milano Swine stool SXB_BS.0003
188806 SM48b 06/03/2009 Reggio Emilia Swine intestine SXB_BS.0003
188790 SM47 10/01/2002 Pavia Surface water SXB_BS.0003
188795 SM49b 03/09/2009 Brescia Chicken farm SXB_PR.0753
188787 SM51 09/17/2002 Pavia Surface water SXB_BS.0003
188781 SM50b 07/31/2001 Modena Minced pork SXB_PR.0751
a

The isolates above the line break are the outbreak-related isolates (15 human-origin and 5 food-origin isolates), and those below the line break are the 19 Salmonella Manhattan collection isolates. SM32 and SM52 were also collection isolates, but they were eventually attributed to the outbreak, following the results of this study.

b

These Salmonella Manhattan isolates were selected for whole-genome sequencing.