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. 2015 Mar 19;5:9264. doi: 10.1038/srep09264

Figure 1. Example of one regulatory SNP (G/A) validated in a ERF TF gene by Illumina GoldenGate genotyping assay showing homozygous and heterozygous cluster separation for 190 mapping individuals along with two parental genotypes (a) and 92 desi and kabuli genotypes (b) based on plotting of normalised R [sum of intensities of the two channels (Cy3 and Cy5)] on the y-axis vs. normalised theta [(2/π)Tan-1(Cy5/Cy3)] on the x-axis.

Figure 1

A normalised theta value nearest 0 is homozygous for allele A (red), a theta value nearest 0.5 is heterozygote AB (violet) and a theta value nearest 1 is homozygous for allele B (blue).