Table 1.

Overview of the different scenarios

Scenario names	Type of data	Minor allele frequency threshold (%)	Number of segregating variants
A ped	Pedigree	None	0
G SNP5+	BovineSNP50 BeadChip	≥ 5	41 225
G SNP1+	BovineSNP50 BeadChip	≥ 1	44 548
G SNP1_5	BovineSNP50 BeadChip	Between 1 and 5	3 323
G WGS5+	Whole genome sequence	≥ 5	11 953 905
G WGS1+	Whole genome sequence	≥ 1	15 871 933
G WGS1_5	Whole genome sequence	Between 1 and 5	3 918 028