Table 2.
β-Barrel probability categorization.
| Category | Major criteria | Minor criteria | Anabaena sp. PCC 7120 | All cyanobacteria | ||
|---|---|---|---|---|---|---|
| TMBp | pHMM | Pfam | CLOGs | |||
| (a) | Probable | Probable | Potential | Detected | 39 | 703 |
| (b) | Probable | Probable | One of the two criteria | 7 | 179 | |
| (c) | Probable | Probable | – | – | 4a/0b | 78a/37b |
| (d) | Others | 6089 | 228,326 | |||
Shown is the category of the β-barrel prediction (column 1), the major criteria based on TMBp (column 2) and pHMM (column 3) analysis, the minor criteria based on Pfam search for non-β-barrel domains (column 4) or analysis of the CLOG composition (column 4); the number of identified genes in Anabaena sp. PCC 7120 (column 6) or in all cyanobacteria (column 7).
a
before and
b
after structural prediction by Phyre2 and manual inspection.