Table 7.
Pfam nomenclature for β-barrel domain | Cluster | Strain | Orders* | Sequences | |||
---|---|---|---|---|---|---|---|
(Glucose selective) OprB | 9 | 7 | 58 | 2 | 6 | 8 | 295 |
20 | 9 | 2 | 15 | ||||
21 | 58 | 6 | 274 | ||||
Omp85 | 10 | 58 | 6 | 155 | |||
LptD (DUF3769) | 7 | 56 | 6 | 56 | |||
TonB_dep_Rec/TBDT | 6 | 22 | 6 | 124 | |||
OmpA_Pfam/OMPdb | 11 | 14 | 20 | 5 | 5 | 15 | 27 |
14 | 3 | 3 | 5 | ||||
16 | 7 | 2 | 7 | ||||
Omp_β-brl | 13 | 7 | 17 | 4 | 5 | 10 | 27 |
15 | 9 | 1 | 11 | ||||
18 | 5 | 4 | 6 | ||||
DUF3442 Intimin/Invasin | 3 | 5 | 16 | 2 | 3 | 6 | 32 |
4 | 3 | 3 | 6 | ||||
5 | 10 | 2 | 20 | ||||
Fasciclin | 17 | 5 | 3 | 5 | |||
DUF481a | 1 | 4 | 15 | 1 | 2 | 6 | 17 |
8 | 11 | 2 | 11 | ||||
OmpW | 19 | 5 | 2 | 5 | |||
Cellulose synthesis complex barrel/BcsC | 2 | 5 | 2 | 5 | |||
Autotransporter | 12 | 4 | 1 | 5 |
Shown are the names of the Pfam domains characteristic for the β-barrel families (column 1), the number of the cluster according to Additional File 11 in Supplementary Material (column 2), number of strains of which a sequence is present in the cluster (column 3) or in all clusters of the same family (column 4), the number of orders of which sequences are in the cluster (column 5) or in all clusters of the same family (column 6), and the number of different sequences in the cluster (column 7) or in all clusters of the same family (column 8).
Orders: Chroococcales, Gloeobacterales, Nostocales, Oscillatoriales, Prochlorales, Stigonematales.
DUF, domain of unknown function.