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. 2015 Mar 19;6:219. doi: 10.3389/fmicb.2015.00219

Table 7.

Clusters of β-barrel representing sequences.

Pfam nomenclature for β-barrel domain Cluster Strain Orders* Sequences
(Glucose selective) OprB 9 7 58 2 6 8 295
20 9 2 15
21 58 6 274
Omp85 10 58 6 155
LptD (DUF3769) 7 56 6 56
TonB_dep_Rec/TBDT 6 22 6 124
OmpA_Pfam/OMPdb 11 14 20 5 5 15 27
14 3 3 5
16 7 2 7
Omp_β-brl 13 7 17 4 5 10 27
15 9 1 11
18 5 4 6
DUF3442 Intimin/Invasin 3 5 16 2 3 6 32
4 3 3 6
5 10 2 20
Fasciclin 17 5 3 5
DUF481a 1 4 15 1 2 6 17
8 11 2 11
OmpW 19 5 2 5
Cellulose synthesis complex barrel/BcsC 2 5 2 5
Autotransporter 12 4 1 5

Shown are the names of the Pfam domains characteristic for the β-barrel families (column 1), the number of the cluster according to Additional File 11 in Supplementary Material (column 2), number of strains of which a sequence is present in the cluster (column 3) or in all clusters of the same family (column 4), the number of orders of which sequences are in the cluster (column 5) or in all clusters of the same family (column 6), and the number of different sequences in the cluster (column 7) or in all clusters of the same family (column 8).

*

Orders: Chroococcales, Gloeobacterales, Nostocales, Oscillatoriales, Prochlorales, Stigonematales.

a

DUF, domain of unknown function.