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. 2014 Nov 25;1:140045. doi: 10.1038/sdata.2014.45

Table 1. Summary of DNA samples.

Dataset Name Sample ID DNA extraction gDNA size (kb) Shearing Size selection
The NCBI sample ID associated with each dataset is provided. DNA was extracted in a species-specific manner, yielding genomic DNA of various sizes. All DNA was size selected using the Blue Pippin system (Sage Sciences), and select samples were sheared with g-TUBEs (Covaris).          
E. coli MG1655 P4C2 SAMN02951645 ammonium acetate or SDS, proteinase K, phenol-chloroform 17 none Blue Pippin (7 kb)
E. coli MG1655 P5C3 SAMN02743420 ammonium acetate or SDS, proteinase K, phenol-chloroform 17 none Blue Pippin (7 kb)
S. cerevisiae 9464 P4C2 SAMN02731377 Qiagen genomic DNA buffer set >40 g-TUBE Blue Pippin (17 kb)
N. crassa OR74A P4C2 SAMN02724975 BashingBeads, Zymo Research kit 6 none Blue Pippin (4 kb)
N. crassa T1 P4C2 SAMN02724976 SDS, proteinase K, phenol-chloroform, RNAase, isopropanol 15 none Blue Pippin (7 kb)
A. thaliana Ler-0 P4C2 SAMN02731378 CTAB, chloroform:isoamyl, isopropanol precip. >40 g-TUBE Blue Pippin (7 kb)
A. thaliana Ler-0 P5C3 SAMN02724977 CTAB, chloroform:isoamyl, isopropanol precip. >40 g-TUBE Blue Pippin (15 kb)
D. melanogaster ISO1 P5C3 SAMN02614627 SDS, phenol-chloroform, CsCl banding, ethanol precip. >40 g-TUBE Blue Pippin (17 kb)