Table 1. The common QTLs identified for both PGC and DEC in the ZS/NIP CSSL population using the SNP bin markers.
| Chr. | Bin No. | Bin size (Mb) a | QTL | PGC | DEC | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Effect | P value b | PVE % | Effect | P value | PVE% | gene c | ||||
| 1 | B12 | 6.1–7.1 | qPGC1–1 | -0.135 | 4.43E-03 | 4.7 | -0.045 | 5.85E-03 | 4.9 | |
| 1 | B39 | 28.4–28.8 | qPGC1–2 | -0.140 | 2.93E-03 | 4.9 | -0.070 | 3.56E-05 | 3.8 | SSIV |
| 1 | B54 | 38.6–38.7 | qPGC1–3 | -0.153 | 1.89E-05 | 4.5 | -0.055 | 9.13E-05 | 6.6 | |
| 1 | B62 | 40.0–40.2 | qPGC1–4 | -0.125 | 8.51E-04 | 1.7 | -0.038 | 6.80E-03 | 3.4 | |
| 2 | B109 | 22.1–23.1 | qPGC2–2 | 0.091 | 7.30E-03 | 2.9 | 0.042 | 2.43E-03 | 4.9 | |
| 5 | B263 | 2.3–3.8 | qPGC5–1 | -0.140 | 4.51E-03 | 6.7 | -0.063 | 1.36E-04 | 4.3 | Chalk5 |
| 8 | B382 | 9.6–15.8 | qPGC8–1 | -0.147 | 1.68E-03 | 7.1 | -0.071 | 5.49E-06 | 4.8 | |
| 8 | B393 | 24.6–26.1 | qPGC8–2 | -0.162 | 2.67E-04 | 3.3 | -0.045 | 3.17E-03 | 3.5 | ISA1 |
| 10 | B441 | 11.7–13.2 | qPGC10–2 | -0.129 | 5.60E-03 | 5.0 | -0.072 | 4.80E-06 | 7.4 | |
a The physical positions of bin size presented according to rice TIGR6.1.
b When two or more consecutive bins were significant, the lowest value is indicated.
c refers to those genes nearby 500 kb of the most significantly associated SNP.