Table 2. Detail of PCR primers used for Restriction fragment length polymorphism.
Gene | SNP name | alleles | Forward/Reverse primer sequence (5’-3’) | PCR product size | Restriction enzyme |
---|---|---|---|---|---|
TLR1 | R80T | G>C | F-5’ TTCCTAAAGACCTATCCCAG3’ | 341 bp | Hinf1 |
R-5’GAGCAATTGGCAGCACACTAG3’ | |||||
TLR2 | R753Q | G>A | F-5’ CATAAGCGGGACTTCATTCCTGCAA3’ | 372 bp | Pst1 |
R-5’GATCCCAACTAGACAAGACTGGTCT3’ | |||||
TLR3 | S258G | A>G | F-5’GGGTCCCAGCCTTACAGAGA3’ | 341 bp | BsuRI |
R-5’CAATCTTGGGGAGTGAGGCA3’ | |||||
TLR5 | R392X | C>T | F-5’GGTAGCCTACATTGATTTGC3’ | 346 bp | Dde1 |
F-5’GGATTCTCTGAAGGGGTTTAT3’ | |||||
TLR5 | N592S | A>G | F-5’GACTAAGCCTCAACTCCAACA3’ | 314 bp | Mun1 |
R-5’GACTTCCTCTTCATCACAACC3; | |||||
TLR6 | S249P | T>C | F-5’CTAGTTTATTCGCTATCCAAG3’ | 312 bp | Eco47I |
R-5’TTGTCAATGCTTTCAATGTCG3’ |
PCR = Polymerase chain reaction, TLR = Toll like receptor, bp = Base pairs, SNP = Single nucleotide polymorphism.