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. 2015 Mar 19;10(3):e0120163. doi: 10.1371/journal.pone.0120163

Table 1. Databases used to compare 7,645 SNP markers developed from the Brassica rapa genome with the Brassica oleracea genome.

Analysis Content URL
Blocks Multiply aligned ungaped segments corresponding to the most highly conserved regions of proteins http://blocks.fhcrc.org
COG Clusters of orthologous groups http://www.ncbi.nlm.nih.gov/COG
EMBL First DNA database in Europe http://www.ebi.ac.uk/embl
FunCat Functional catalog from MIPS http://mips.helmholtz-muenchen.de/proj/funcatDB
PDB Database of protein and nucleic acid three dimensional structure http://www.rcsb.rog/pdb/home/home.do
Pfam Protein domain database from the Sanger Center http://www.sanger.ac.uk/Software/Pfam
PROSITE Databases from the Swiss Institute of Bioinformatics http://www.expasy.ch/prosite
SCOP Structural classification of proteins http://scop.mrc-lmb.cam.ac.uk/scop
UniProt Universal Protein Resource(SWISS-PROT and TrEMBL) http://www.ebi.uniprot.org/index.html
GO Gene Ontology http://www.geneontology.org