Table 2. Datasets used to analyze the applicability and orthology of SNP markers based on the Brassica rapa genome to the Brassica oleracea genome.
Sequence | Brassica rapa | Brassica oleracea | Arabidopsis thaliana |
---|---|---|---|
EST | 194,305 | 59,946 | |
Genome | 198,585 (GSS a ) | 680,894 (GSS a ) | Chromosome (5) |
mRNA | 3,965 | 1,772 | - |
Protein | 2,062 | 1,735 | 32,615 |
nrProtein b | 55,420 | 20,632 | 32,615 |
a. GSS: Genome Survey Sequence.
b. nrProtein: Final protein sequence as a non-redundant protein dataset for ortholog analysis