Table 1. Table showing the parameters, their respective resource sets, and the values that were allowed in SMBioNet, generated by SMBioNet in the parameter sets, and finally selected for modelling in Petri Nets.
Parameters | Resources | Values | ||
---|---|---|---|---|
Allowed | Generated | Selected | ||
K CB | {} | 0 | 0 | 0 |
{HSF1} | 0, 1 | 0 | 0 | |
{PARP1} | 0 | 0 | 0 | |
{PC} | 0 | 0 | 0 | |
{SIRT1} | 0 | 0 | 0 | |
{HSF1, PARP1} | 0, 1 | 0 | 0 | |
{PARP1, PC} | 0 | 0 | 0 | |
{PARP1, SIRT1} | 0 | 0 | 0 | |
{HSF1, PC} | 0, 1 | 0, 1 | 0 | |
{PC, SIRT1} | 0 | 0 | 0 | |
{HSF1, SIRT1} | 0, 1 | 0 | 0 | |
{HSF1, PARP1, SIRT1} | 0, 1 | 0 | 0 | |
{HSF1, PARP1, PC} | 0, 1 | 0, 1 | 1 | |
{HSF1, PC, SIRT1} | 0, 1 | 0, 1 | 0 | |
{PARP1, PC, SIRT1} | 1 | 1 | 1 | |
{HSF1, PARP1, PC, SIRT1} | 1 | 1 | 1 | |
K PC | {} | 0 | 0 | 0 |
{CB} | 0, 1 | 1 | 1 | |
{SIRT1} | 0 | 0 | 0 | |
{CB, SIRT1} | 1 | 1 | 1 | |
K SIRT1 | {} | 0 | 0 | 0 |
{CB} | 0 | 0 | 0 | |
{Feed} | 0 | 0 | 0 | |
{PARP1} | 0 | 0 | 0 | |
{CB, Feed} | 0, 1 | 0, 1 | 0 | |
{Feed, PARP1} | 1 | 1 | 1 | |
{CB, PARP1} | 0 | 0 | 0 | |
{CB, Feed, PARP1} | 1 | 1 | 1 | |
K PARP1 | {} | 0 | 0 | 0 |
{Feed} | 1 | 1 | 1 | |
{SIRT1} | 0, 1 | 0, 1 | 0 | |
{Feed, SIRT1} | 1 | 1 | 1 | |
K HSF1 | {} | 0 | 0 | 0 |
{Feed} | 0, 1 | 1 | 1 | |
{PARP1} | 0 | 0 | 0 | |
{SIRT1} | 0, 1 | 0, 1 | 0 | |
{Feed, PARP1} | 0, 1 | 1 | 1 | |
{PARP1, SIRT1} | 1 | 1 | 1 | |
{Feed, SIRT1} | 0, 1 | 1 | 1 | |
{Feed, PARP1, SIRT1} | 1 | 1 | 1 | |
K Feed | {} | 0 | 0 | 0 |
{Feed} | 1 | 1 | 1 |