Tandem affinity-purified YLR290C-CNAP co-purifies with Q and late-stage Q intermediates. For each strain, aliquots of the anti-PC eluates (29% of E1 and 29% of E2) were combined and subjected to lipid extraction with methanol and petroleum ether. Lipid extracts were analyzed by HPLC-MS/MS for total Q6 (Q6 + Q6H2) (A), DMQ6 (C), and IDMQ6 (E). Measured lipids were normalized by the extracted eluate volume. The bars represent the mean of two measurements, and the error bars represent the standard deviation. Statistical significance was determined with the two-tailed Student's t test, and the lowercase letters above the bars are indicative of statistical significance. In A, the content of Q6 in CA-1 was 5.4-fold higher compared with wild type (a, p = 0.0418). In C, the content of DMQ6 in CA-1 was 6.7-fold higher compared with wild type (a, p = 0.0025). In E, there was no detectable IDMQ6 in the wild type. ND, not detected. Representative overlaid traces of both strains (W303, magenta; CA-1, green) are shown for Q6 (B), DMQ6 (D), and IDMQ6 (F).