|
| Parameter |
Value |
|
|
|
|
|
on/off rate constants for dimer formation |
|
,
|
|
on/off rate constant for ligand binding |
|
K2
|
|
dimer dissociation constant |
|
K3,K4
|
,
|
ligand-dimer dissociation constants |
| K |
|
dissociation constant for cooperative ligand binding |
|
b1
|
∼1000h−1
|
production rate of R [26] |
| bs |
|
background S production |
| ks |
∼100 bs
|
maximal S production rate |
| κs |
bs < κs < ks
|
S production |
|
λ1
|
∼20h−1
|
R monomer degradation, [3] |
|
λ2, λ3, λ4
|
<1 h−1
|
dimer degradation (including growth) [12,21] |
|
λd
|
|
averaged dimer degradation rate |
| Rt |
[PR], [PS] |
intracellular promoter density |
|
r1, r2, r3, r4
|
[R], [R2], [R2S], [R2S2] |
regulator monomer and dimer concentrations |
| r |
|
total regulator concentration |
| ra |
r4, [R2S2] |
activated regulator concentration |
| rm |
|
maximal ra
|
| s |
[S] |
signal molecule concentration |
| t |
|
time |
| PR |
|
promoter for R synthesis |
| R |
|
regulator protein |
| PS |
|
promoter for S synthetase |
| S |
|
signal molecule/ligand |
| K |
10 nM−10 μm |
R2S2 dissociation constant [13–15,32] |
| Ks |
|
R2S2-PS dissociation constant |
| D |
∼2 mm2/h |
diffusion constant for S (AHLs) |
| ρv |
<1 |
bacterial density (v/v) |
| Σ |
ρv
2
|
colony “size” measure |
|
10−70 μm |
radius of colony [5,29] |
|