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. 2015 Feb 12;15(2):4229–4241. doi: 10.3390/s150204229

Parameter Value

k2±
on/off rate constants for dimer formation
k3±, k4± on/off rate constant for ligand binding
K2
k2/k2+
dimer dissociation constant
K3,K4 k3/k3+, k4/k4+ ligand-dimer dissociation constants
K
K3K4
dissociation constant for cooperative ligand binding
b1 ∼1000h−1 production rate of R [26]
bs background S production
ks ∼100 bs maximal S production rate
κs bs < κs < ks S production
λ1 ∼20h−1 R monomer degradation, [3]
λ2, λ3, λ4 <1 h−1 dimer degradation (including growth) [12,21]
λd averaged dimer degradation rate
Rt [PR], [PS] intracellular promoter density
r1, r2, r3, r4 [R], [R2], [R2S], [R2S2] regulator monomer and dimer concentrations
r total regulator concentration
ra r4, [R2S2] activated regulator concentration
rm
bsksKs
maximal ra
s [S] signal molecule concentration
t time
PR promoter for R synthesis
R regulator protein
PS promoter for S synthetase
S signal molecule/ligand
K 10 nM−10 μm R2S2 dissociation constant [1315,32]
Ks R2S2-PS dissociation constant
D ∼2 mm2/h diffusion constant for S (AHLs)
ρv <1 bacterial density (v/v)
Σ ρv Inline graphic2 colony “size” measure
graphic file with name sensors-15-04229i1.jpg 10−70 μm radius of colony [5,29]