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. Author manuscript; available in PMC: 2015 Mar 20.
Published in final edited form as: Nat Protoc. 2014 May 8;9(6):1301–1319. doi: 10.1038/nprot.2014.075

• TIMING

Protein sample preparation and protein-radio-ligand binding assay Step 1-2 1 day
Differential NEM and SA labeling reactions Step 6-7 5-6 hours
CHCb/MeOH precipitation Step 8-16 3-5 hours
Protein solubilization, reduction and alkylation Step 17-19 3-4 hours
In-solution protein digestion Step 20-23 16 hours
Peptide desalting Step 24 4-5 hours
MALDI-TOF/TOF-MS and data analysis Step 25-34 4-6 hours
Quantitation of site-specific labeling kinetics Step 35-61 1 day