Table 1.
RRM families in Pfam database
| Pfam ID | Pfam name | Description | Number of Pfam seed sequences |
|---|---|---|---|
| PF00076 | RRM_1 | Clan RRM, has splicing factor and GO annotation as nucleic acid binding. Well-characterised | 79 |
| PF04059 | RRM_2 | Clan RRM, Meiosis protein mei2 | 4* (310) |
| PF08777 | RRM_3 | Clan RRM, La protein (RNA chaperone), 5 stranded Beta sheet (atypical RRM) | 15* (185) |
| PF10598 | RRM_4 | PrP8 protein (Large RNA protein complex of spliceosome) | 25* (233) |
| PF13893 | RRM_5 | Clan RRM, hnRNP | 107 |
| PF14259 | RRM_6 | Clan RRM | 79 |
| PF10378 | RRM | Found only in fungi, putative RNA binding domain | 7* (74) |
There are seven families defined in Pfam based on their gathering threshold values. The families are listed with their description and the number of seed sequences in Pfam.
*The numbers in brackets represent the full set members when the seed sequences are less than 50 in number.