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. 2014 Dec 23;15(1):1171. doi: 10.1186/1471-2164-15-1171

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© Cuyabano et al.; licensee BioMed Central. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Toy example of haploblocks built when then LD threshold was D ^′ ≥0.75 . (a) Pairwise LD heat map. The color code indicates the amount of LD between two SNPs. (b) Outlined haploblocks based on the LD heat map. The LD between every two SNPs agrees with the threshold D ^′≥0.75.