Table 3.
P-values of the Hotelling’s t-test comparing the prediction reliabilities
obtained with the BLUP and Bayesian mixture models
| Haploblocks and | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Individual SNPs | non-blocked SNPs | Haploblocks only | ||||||||||
| D ′ | Prot. | Fert. | Mast. | Prot. | Fert. | Mast. | Prot. | Fert. | Mast. | |||
| — | 0.034 | 0.624 | 0.254 | — | — | — | — | — | — | |||
| 0.25 | — | — | — | 0.007 | 0.008 | 0.111 | 0.000 | 0.234 | 0.224 | |||
| 0.35 | — | — | — | 0.000 | 0.108 | 0.279 | 0.000 | 0.001 | 0.236 | |||
| 0.45 | — | — | — | 0.001 | 0.408 | 0.277 | 0.000 | 0.000 | 0.542 | |||
| 0.55 | — | — | — | 0.000 | 0.239 | 0.414 | 0.000 | 0.900 | 0.532 | |||
| 0.65 | — | — | — | 0.000 | 0.030 | 0.571 | 0.001 | 0.689 | 0.892 | |||
| 0.75 | — | — | — | 0.008 | 0.284 | 0.208 | 0.011 | 0.172 | 0.201 | |||