Table 2. Characteristics of the microsatellite loci, including the type of fluorescent dye (Dye) and the mixing ratio of fluorescent and non-fluorescent forward primers (Fl: Non-fl), the observed number of alleles (N A), observed (H O) and expected (H E) heterozygosity, probability of exclusion when one parent is known (P EX), and estimated null allele frequency by locus for the 60 individual Castanea crenata trees at the Field Research Center, Tohoku University, Miyagi, Japan.
Locus | Dye | Fl : Non-fl | NA | HO | HE | PEX | Null allele frequency | Reference |
---|---|---|---|---|---|---|---|---|
CsCAT2 | VIC | 2 : 8 | 6 | 0.450 | 0.415 | 0.247 | − 0.0571 | Marinoni et al. [65] |
CsCAT5 | PET | 10 : 0 | 13 | 0.717 | 0.681 | 0.459 | + 0.0334 | Marinoni et al. [65] |
CsCAT14 | 6-FAM | 1 : 9 | 6 | 0.733 | 0.669 | 0.415 | − 0.0502 | Marinoni et al. [65] |
EMCs2 | PET | 1 : 9 | 3 | 0.617 | 0.588 | 0.031 | − 0.0223 | Buck et al. [66] |
EMCs17 | PET | 2 : 8 | 2 | 0.383 | 0.333 | 0.138 | − 0.0750 | Buck et al. [66] |
KT001b | 6-FAM | 2 : 8 | 12 | 0.683 | 0.675 | 0.430 | − 0.0061 | Yamamoto et al. [67] |
KT004a | VIC | 4 : 6 | 12 | 0.750 | 0.790 | 0.594 | + 0.0254 | Yamamoto et al. [67] |
KT005a | NED | 8 : 2 | 13 | 0.917 | 0.859 | 0.708 | − 0.0369 | Yamamoto et al. [67] |
KT020a | NED | 2 : 8 | 5 | 0.633 | 0.535 | 0.324 | − 0.1258 | Yamamoto et al. [67] |
KT024a | 6-FAM | 1 : 9 | 4 | 0.317 | 0.296 | 0.157 | − 0.0382 | Yamamoto et al. [67] |
KT030a | NED | 3 : 7 | 7 | 0.867 | 0.757 | 0.537 | − 0.0726 | T. Yamamoto, pers. comm. |
Mean | 7.5 | 0.642 | 0.600 | 0.997* |
These parameters were calculated using CERVUS 3.0.3 [54].
*Overall combined exclusion probability