Table 1.
Information of JEV isolates analyzed in this study
| Strain | Date | Country | Host a | Genotype | GenBank accession no. |
|---|---|---|---|---|---|
| 47 | 1950’s | China:Heilongjiang | CSF | 3 | JF706269 |
| 14178 | 2001 | India | - | 3 | EF623987 |
| 57434 | 2005 | India | - | 3 | EF623988 |
| 04940-4 | 2002 | India | - | 3 | EF623989 |
| B58 | 1989 | China:Yunnan | Bat | 3 | FJ185036 |
| Beijing-1 | 1949 | China | Human brain | 3 | L48961 |
| BL06-50 | 2006 | China:Guangxi | Culex tritaeniorhynchus | 1 | JF706270 |
| BL06-54 | 2006 | China:Guangxi | Culex tritaeniorhynchus | 1 | JF706271 |
| CBH | 1954 | China:Fujian | CSF | 3 | JN381860 |
| CH-13 | 1957 | China:Sichuan | CSF | 3 | JN381870 |
| CH1392 | 1990 | Taiwan | Culex tritaeniorhynchus | 3 | AF254452 |
| CTS | 1955 | China:Fujian | CSF | 3 | GQ429184 |
| CZX | 1954 | China:Fujian | CSF | 3 | JN381865 |
| DH107 | 1989 | China:Yunnan | Aedes lineatopennis | 3 | JN381873 |
| DL04-29 | 2004 | China:Yunnan | Culex theileri | 3 | JF706272 |
| DL04-45 | 2004 | China:Yunnan | Ar. Subalbatus & Mansonia uniform | 3 | JN381854 |
| Fj02-29 | 2002 | China:Fujian | CSF | 3 | JF706273 |
| Fj02-76 | 2002 | China:Fujian | Human blood | 3 | JN381867 |
| FJ03-39 | 2003 | China:Fujian | Human blood | 3 | JN381859 |
| FJ03-94 | 2003 | China:Fujian | Human blood | 3 | JN381858 |
| FU | 1995 | Australia | Human serum | 2 | AF217620 |
| G35 | 1954 | China:Fujian | Mosquito pool | 3 | GQ429185 |
| GB30 | 1997 | China:Yunnan | Murina aurata brain tissue | 3 | FJ185037 |
| GP78 | 1978 | India | Human brain | 3 | AF075723 |
| GS07-TS11 | 2007 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381843 |
| GSBY0801 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JF706274 |
| GSBY0804 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381844 |
| GSBY0810 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381840 |
| GSBY0816 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381842 |
| GSBY0827 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381845 |
| GSBY0861 | 2008 | China:Gansu | Culex tritaeniorhynchus | 1 | JN381833 |
| GSS | 1960’s | China:Beijing | CSF | 3 | JF706275 |
| GX0519 | 2005 | China:Guanxi | Culex tritaeniorhynchus | 1 | JN381835 |
| GX0523/44 | 2005 | China:Guanxi | Culex tritaeniorhynchus | 1 | JN381832 |
| GZ04-2 | 2004 | China:Guizhou | Armigeres | 3 | JN381857 |
| GZ56 | 2006 | China:GuiZhou | CSF | 1 | HM366552 |
| Ha-3 | 1960’s | China:Heilongjiang | CSF | 3 | JN381872 |
| HB49 | 1990 | China:Yunnan | Rousettus leschenaulti blood | 3 | JF706284 |
| HB97 | 1990 | China:Yunnan | Rousettus leschenaulti blood | 3 | JF706285 |
| HLJ02-134 | 2002 | China:Heilongjiang | Genus culicoides | 3 | JF706276 |
| HN04-11 | 2004 | China:Henan | Culex | 1 | JN381831 |
| HN04-21 | 2004 | China:Henan | Culex | 1 | JN381841 |
| HN06129 | 2006 | China:Henan | Armigeres | 1 | JF706277 |
| HN0621 | 2006 | China:Henan | Culex | 1 | JN381830 |
| HN0626 | 2006 | China:Henan | Culex | 1 | JN381837 |
| HVI | 1965 | Taiwan | Mosquito | 3 | AF098735 |
| HYZ | 1979 | China:Yunnan | Patient blood | 3 | JN381853 |
| Ishikawa | 1994 | Japan | Culex tritaeniorhynchus | 1 | AB051292 |
| JaGAr 01 | 1959 | Japan | Cluex | 3 | AF069076 |
| JaOArS982 | 1982 | Japan | Mosquito | 3 | M18370 |
| JaOH0566/Japan/1966/human | 1966 | Japan | Human | 3 | AY508813 |
| JEV/sw/Mie/40/2004 | 2004 | Japan | Swine serum | 1 | AB241118 |
| JEV/sw/Mie/41/2002 | 2002 | Japan | Swine serum | 1 | AB241119 |
| JH04-18 | 2004 | China:Yunnan | Whitmorei & Anophelessinensis | 3 | JN381855 |
| JKT6468 | 1981 | Indonesia | Mosquito | 4 | AY184212 |
| K87P39 | 1987 | South Korea | Mosquito | 3 | AY585242 |
| KV1899 | 1999 | Korea | Swine | 1 | AY316157 |
| LFM | 1955 | China:Fujian | Human blood | 3 | JN381863 |
| Ling | 1965 | Taiwan | Human brain | 3 | L78128 |
| LN02-102 | 2002 | China:liaoning | Culex modestus | 1 | JF706278 |
| LN0716 | 2007 | China:Liaoning | Culex tritaeniorhynchus | 1 | JN381849 |
| LYZ | 1957 | China:Fujian | CSF | 3 | JN381869 |
| M28 | 1977 | China:Yunnan | Culex pseudovishnui | 1 | JF706279 |
| Nakayama | 1935 | Japan | Human brain | 3 | EF571853 |
| P3 | 1949 | China:Beijing | Human brain | 3 | U47032 |
| RP-2 ms | 1985 | Taiwan | Mosquito | 3 | AF014160 |
| RP-9 | 1985 | Taiwan | Mosquito | 3 | AF014161 |
| SA14 | 1954 | China | Mosquito | 3 | U14163 |
| SC04-12 | 2004 | China:Sichuan | Culex | 1 | JN381839 |
| SC04-15 | 2004 | China:Sichuan | Culex tritaeniorhynchus | 1 | JN381838 |
| SD0810 | 2008 | China:Shandong | Culex tritaeniorhynchus | 1 | JF706286 |
| SH03-103 | 2003 | China:Shanghai | Culex tritaeniorhynchus | 1 | JN381847 |
| SH03-105 | 2003 | China:Shanghai | Culex tritaeniorhynchus | 1 | JN381846 |
| SH04-10 | 2004 | China:Shanghai | Culex tritaeniorhynchus | 3 | JN381856 |
| SH04-5 | 2004 | China:Shanghai | Culex tritaeniorhynchus | 3 | JN381866 |
| SH17M-07 | 2007 | China | - | 1 | EU429297 |
| SH-3 | 1987 | China:Shanghai | CSF | 3 | JN381864 |
| SH-53 | 2001 | China:Shanghai | Culex tritaeniorhynchus | 1 | JN381850 |
| SH-80 | 2001 | China:Shanghai | Culex tritaeniorhynchus | 1 | JN381848 |
| T1P1 | 1997 | Taiwan | Armigeres subalbatus | 3 | AF254453 |
| TLA | 1971 | China:Liaoning | CSF | 3 | JN381868 |
| Vellore P20778 | 1958 | India | Human brain | 3 | AF080251 |
| XJ69 | 2007 | China | Culex pipiens pallens | 1 | EU880214 |
| XJP613 | 2007 | China | Culex tritaeniorhynchus | 1 | EU693899 |
| XZ0938 | 2009 | China:Xizang | Culex tritaeniorhynchus | 1 | HQ652538 |
| YLG | 1955 | China:Fujian | CSF | 3 | JF706280 |
| YN | 1954 | China:Yunnan | CSF | 3 | JN381871 |
| YN05124 | 2005 | China:Yunnan | Culex tritaeniorhynchus | 1 | JF706281 |
| YN05155 | 2005 | China:Yunnan | Culex tritaeniorhynchus | 1 | JN381852 |
| YN0623 | 2006 | China:Yunnan | Culex tritaeniorhynchus | 1 | JN381836 |
| YN0911 | 2009 | China:Yunnan | Culex tritaeniorhynchus | 1 | JF706267 |
| YN0967 | 2009 | China:Yunnan | Culex tritaeniorhynchus | 1 | JF706268 |
| YN79-Bao83 | 1979 | China:Yunnan | Culex tritaeniorhynchus | 1 | JN381851 |
| YN82-BN8219 | 1982 | China:Yunnan | Mosquito | 1 | JN381834 |
| YN83-Meng83-54 | 1983 | China:Yunnan | Lasiohelea taiwana Shiraki | 1 | JF706282 |
| YN98-A151 | 2003 | China:Yunnan | Mosquitoes | 3 | JN381861 |
| ZMT | 1955 | China:Fujian | CSF | 3 | JF706283 |
| ZSZ | 1955 | China:Fujian | CSF | 3 | JN381862 |
| Muar | 1952 | Malaysia | Human brain | 5 | HM596272 |
| XZ0934 | 2009 | China:Tibet | Culex tritaeniorhynchus | 5 | JF915894 |
a- Information not available.