Table 4. Mean breakpoint error for simulated and gold standard datasets.

Lowest error for each measurement is bolded. GROM-RD had the lowest deletion (Del) and duplication (Dup) breakpoint error for all datasets.

	Simulation		NA12878 (low coverage)		NA12878 (high coverage)
Algorithm	Del	Dup	Del	Dup	Del	Dup
CNVnator	278	303	8,486	47,057	2,846	23,729
RDXplorer	270	147	23,587	11,823	8,454	27,122
GROM-RD	128	91	4,687	22,555	2,025	13,536